Evidence map›Paper›PMID 19628243›Full record

ArticleVirology2009

Adeno-associated virus and adenovirus coinfection induces a cellular DNA damage and repair response via redundant phosphatidylinositol 3-like kinase pathways.

Roy F Collaco, Joyce M Bevington, Vipul Bhrigu, Vivian Kalman-Maltese, James P Trempe

Open access · greenAbstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Adeno-associated virus Rep proteins antagonize phosphatase PP1 to counteract KAP1 repression of the latent viral genome.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. DNA virus replication compartments.Journal of virology · 2014
    Review
  14. Article
  15. Parvovirus diversity and DNA damage responses.Cold Spring Harbor perspectives in biology · 2013
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Roy F CollacoDepartment of Biochemistry and Cancer Biology, University of Toledo, College of Medicine, Toledo, OH 43614-2598, USA.
Joyce M Bevington
Vipul Bhrigu
Vivian Kalman-Maltese
James P Trempe
University of Toledo · USToledo Clinic Cancer Center · US

Funding

Regulation of AAV Rep Protein FunctionR01AI051471 · NIAID · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI TREMPE, JAMES P · 2002 to 2006
$1.4M
AAV, helper virus and host cell interactionsR01GM064765 · NIGMS · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI TREMPE, JAMES P · 2002 to 2005
$1.1M
NIAID NIH HHS AI51471NIAID NIH HHS R01 AI051471NIGMS NIH HHS GM64765NIGMS NIH HHS R01 GM064765
6 · The paper itself

Abstract

During adeno-associated virus and adenovirus (AAV/Ad) coinfection, accumulation of viral genomes and proteins can alter cellular stress responses. To determine how AAV/Ad coinfection affects the host we screened over 60 cellular proteins for their responses. AAV/Ad coinfections induce a robust DNA damage response (DDR) that is distinct from that induced by Ad infection alone. Using chemical inhibitors, deficient cell lines and siRNA knockdowns of the DDR kinases, ATM, ATR and DNA-PK, we determined that DNA-PK and ATM kinases are the initial transducers of this response. AAV/Ad coinfection induces ATM- and DNA-PK mediated phosphorylation of RPA2, NBS1, H2AX and the checkpoint kinases CHK1/2. Inhibition of one or more of the DDR kinases reduces the level of phosphorylation of downstream targets but does not dramatically reduce Ad or AAV protein expression. However, AAV DNA levels are moderately affected by kinase inhibition. These experiments provide new insights into the cellular responses to AAV/Ad coinfections.

Indexed as

Adenoviruses, HumanAtaxia Telangiectasia Mutated ProteinsBase SequenceCell Cycle ProteinsCell LineChromonesDependovirusDNA-Activated Protein KinaseDNA-Binding ProteinsDNA DamageDNA RepairDNA, ViralHeLa CellsHumansModels, BiologicalMorpholines2-morpholin-4-yl-6-thianthren-1-yl-pyran-4-one8-dibenzothiophen-4-yl-2-morpholin-4-yl-chromen-4-oneAtaxia Telangiectasia Mutated ProteinsATM protein, humanATR protein, humanCell Cycle ProteinsChromonesDNA-Activated Protein KinaseDNA-Binding ProteinsDNA, ViralMorpholinesNuclear ProteinsPhosphatidylinositol 3-KinasesPRKDC protein, humanProtein Kinase InhibitorsProtein Serine-Threonine KinasesPyronesRNA, Small InterferingTumor Suppressor Proteins

Identifiers

PMID19628243
PMCPMC2742906
OpenAlexW1967964018

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.