Evidence map›Paper›PMID 19626680›Full record

ArticleJournal of cellular physiology2009

Regulation of HIV-1 transcription at 3% versus 21% oxygen concentration.

Sharroya Charles, Tatyana Ammosova, Jessica Cardenas, Altreisha Foster, Jamie Rotimi, Marina Jerebtsova, Abisola A Ayodeji, Xiaomei Niu, Patricio E Ray, Victor R Gordeuk and 2 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of cellular physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  7. Impact of Hypoxia over Human Viral Infections and Key Cellular Processes.International journal of molecular sciences · 2021
    Review
  8. Establishing Rules for Self-Adhesion and Aggregation ofLangmuir : the ACS journal of surfaces and colloids · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sharroya CharlesCenter for Sickle Cell Disease, Howard University, Washington, DC 20001, USA.
Tatyana Ammosova
Jessica Cardenas
Altreisha Foster
Jamie Rotimi
Marina Jerebtsova
Abisola A Ayodeji
Xiaomei Niu
Patricio E Ray
Victor R Gordeuk
Fatah Kashanchi
Sergei Nekhai
Howard University · USChildren's National · USGeorge Washington University · US

Funding

STRUCTURAL/FUNCTIONAL CHARACTERIZATION OF AMINOGLYCOSIDEG12RR003048 · NCRR · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 1985 to 2011
$19.0M
UVDM01RR010284 · NCRR · HOWARD UNIVERSITY · PI TAYLOR, ROBERT E. · 1996 to 2010
$17.4M
Role of bFGF low affinity receptors in childhood HIVANR01DK049419 · NIDDK · UNIVERSITY OF VIRGINIA · PI PATRICIO E. RAY · 1994 to 2026
$7.4M
Pathogenesis of HIV-HUS in childrenR01HL055605 · NHLBI · CHILDREN'S RESEARCH INSTITUTE · PI RAY, PATRICIO E. · 1995 to 2012
$4.3M
Howard University Research Scientist AwardR25HL003679 · NHLBI · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2005 to 2009
$1.7M
Regulation of HIV-1 Transcription by CDK2SC1GM082325 · NIGMS · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2008 to 2011
$1.2M
NCRR NIH HHS 2 M01 RR10284NCRR NIH HHS G12 RR003048NCRR NIH HHS M01 RR010284NHLBI NIH HHS 2 R25 HL003679-08NHLBI NIH HHS R01 HL055605NHLBI NIH HHS R01 HL55605NHLBI NIH HHS R25 HL003679NIDDK NIH HHS R01 DK049419NIDDK NIH HHS R01 DK49419NIGMS NIH HHS GM 082325-01NIGMS NIH HHS SC1 GM082325
6 · The paper itself

Abstract

HIV transcription is induced by the HIV-1 Tat protein, in concert with cellular co-factors including CDK9, CDK2, NF-kappaB, and others. The cells of most of the body's organs are exposed to approximately 3-6% oxygen, but most in vitro studies of HIV replication are conducted at 21% oxygen. We hypothesized that activities of host cell factors involved in HIV-1 replication may differ at 3% versus 21% O(2), and that such differences may affect HIV-1 replication. Here we show that Tat-induced HIV-1 transcription was reduced at 3% O(2) compared to 21% O(2). HIV-1 replication was also reduced in acutely or chronically infected cells cultured at 3% O(2) compared to 21% O(2). This reduction was not due the decreased cell growth or increased cellular toxicity and also not due to the induction of hypoxic response. At 3% O(2), the activity of CDK9/cyclin T1 was inhibited and Sp1 activity was reduced, whereas the activity of other host cell factors such as CDK2 or NF-kappaB was not affected. CDK9-specific inhibitor ARC was much less efficient at 3% compared to 21% O(2) and also expression of CDK9/cyclin T1-dependent IkappaB inhibitor alpha was repressed. Our results suggest that lower HIV-1 transcription at 3% O(2) compared to 21% O(2) may be mediated by lower activity of CDK9/cyclin T1 and Sp1 at 3% O(2) and that additional host cell factors such as CDK2 and NF-kappaB might be major regulators of HIV-1 transcription at low O(2) concentrations.

Indexed as

Cell LineCell ProliferationCell SurvivalCyclin-Dependent Kinase 2Cyclin-Dependent Kinase 9CyclinsCyclin TGene Expression Regulation, ViralHIV-1HumansHypoxia-Inducible Factor 1, alpha SubunitMonocytesNF-kappa BOxygenSp1 Transcription Factortat Gene Products, Human Immunodeficiency VirusCCNT1 protein, humanCDK2 protein, humanCyclin-Dependent Kinase 2Cyclin-Dependent Kinase 9CyclinsCyclin THIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitNF-kappa BOxygenSp1 Transcription Factortat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID19626680
PMCPMC2778305
OpenAlexW2104244466

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.