Evidence map›Paper›PMID 19625405›Full record

ArticleJournal of virology2009

Bypass suppression of small-plaque phenotypes by a mutation in poliovirus 2A that enhances apoptosis.

Trever B Burgon, Jomaquai A Jenkins, Stephen B Deitz, Jeannie F Spagnolo, Karla Kirkegaard

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Viral security proteins: counteracting host defences.Nature reviews. Microbiology · 2010
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Trever B BurgonDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305-5402, USA.
Jomaquai A Jenkins
Stephen B Deitz
Jeannie F Spagnolo
Karla Kirkegaard
Stanford University · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
PROTEIN-RNA INTERACTIONS AND POLIOVIRUS RNA REPLICATIONR01AI025166 · NIAID · UNIVERSITY OF COLORADO AT BOULDER · PI KIRKEGAARD, KARLA · 1994 to 1998
–
NUCLEIC ACID--PROTEIN INTERACTIONS AND POLIOVIRUSR29AI025166 · NIAID · UNIVERSITY OF COLORADO AT BOULDER · PI KIRKEGAARD, KARLA · 1987 to 1991
–
NIAID NIH HHS AI-007328NIAID NIH HHS AI-25166NIAID NIH HHS T32 AI007328
6 · The paper itself

Abstract

The rate of protein secretion in host cells is inhibited during infection with several different picornaviruses, with consequences likely to have significant effects on viral growth, spread, and pathogenesis. This Sin(+) (secretion inhibition) phenotype has been documented for poliovirus, foot-and-mouth disease virus, and coxsackievirus B3 and can lead to reduced cell surface expression of major histocompatibility complex class I and tumor necrosis factor receptor as well as reduced extracellular secretion of induced cytokines such as interleukin-6 (IL-6), IL-8, and beta interferon. The inhibition of protein secretion is global, affecting the movement of all tested cargo proteins through the cellular secretion apparatus. To test the physiological significance of the Sin(-) and Sin(+) phenotypes in animal models, Sin(-) mutant viruses are needed that fail to inhibit host protein secretion and also exhibit robust growth properties. To identify such Sin(-) mutant polioviruses, we devised a fluorescence-activated cell sorter-based screen to select virus-infected cells that nevertheless expressed newly synthesized surface proteins. After multiple rounds of selection, candidate Sin(-) mutant viruses were screened for genetic stability, increased secretion of cargo molecules and wild-type translation and growth properties. A newly identified Sin(-) mutant poliovirus that contained coding changes in nonstructural proteins 2A (N32D) and 2C (E253G) was characterized. In this virus, the 2C mutation is responsible for the Sin(-) phenotype and the 2A mutation suppresses a resulting growth defect by increasing the rate of cell death and therefore the rate of viral spread. The 2A-N32D suppressor mutation was not allele specific and, by increasing the rate of cellular apoptosis, affected a completely different pathway than the 2C-E253G Sin(-) mutation. Therefore, the 2A mutation suppresses the 2C-E253G mutant phenotype by a bypass suppression mechanism.

Indexed as

ApoptosisMutationCell Line, TumorCell SeparationFlow CytometryGene Expression Regulation, ViralHeLa CellsHumansInterferon-betaInterleukin-6Interleukin-8PhenotypePoliovirusRNA, ViralViral ProteinsInterferon-betaInterleukin-6Interleukin-8RNA, ViralViral Proteins

Identifiers

PMID19625405
PMCPMC2748046
OpenAlexW2036765856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.