Evidence map›Paper›PMID 19625340›Full record

ArticleMolecular & cellular proteomics : MCP2009

Lack of A-factor production induces the expression of nutrient scavenging and stress-related proteins in Streptomyces griseus.

Zsuzsanna Birkó, Magdalena Swiatek, Emília Szájli, Katalin F Medzihradszky, Erik Vijgenboom, András Penyige, Judit Keseru, Gilles P van Wezel, Sándor Biró

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Zsuzsanna BirkóDepartment of Human Genetics, Faculty of Medicine, Medical and Health Science Center, University of Debrecen, Debrecen, Hungary.
Magdalena Swiatek
Emília Szájli
Katalin F Medzihradszky
Erik Vijgenboom
András Penyige
Judit Keseru
Gilles P van Wezel
Sándor Biró
University of Debrecen · HULeiden University · NLHungarian Academy of Sciences · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The small gamma-butyrolactone A-factor is an important autoregulatory signaling molecule for the soil-inhabiting streptomycetes. Starvation is a major trigger for development, and nutrients are provided by degradation of the vegetative mycelium via a process of programmed cell death, reusing proteins, nucleic acids, and cell wall material. The A-factor regulon includes many extracellular hydrolases. Here we show via proteomics analysis that many nutrient-scavenging and stress-related proteins were overexpressed in an A-factor non-producing mutant of Streptomyces griseus B-2682. Transcript analysis showed that this is primarily due to differential transcription of the target genes during early development. The targets include proteins relating to nutrient stress and environmental stress and an orthologue of the Bacillus sporulation control protein Spo0M. The enhanced expression of these proteins underlines the stress that is generated by the absence of A-factor. Wild-type developmental gene expression was restored to the A-factor non-producing mutant by the signaling protein Factor C in line with our earlier observation that Factor C triggers A-factor production.

Indexed as

Stress, Physiological4-ButyrolactoneAmino Acid SequenceBacterial ProteinsGene Expression Regulation, BacterialHeat-Shock ProteinsMolecular Sequence DataProteomeStreptomyces griseusTranscription, Genetic4-ButyrolactoneBacterial ProteinsHeat-Shock ProteinsProteome

Identifiers

PMID19625340
PMCPMC2758764
OpenAlexW2160515938

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.