Evidence map›Paper›PMID 19623249›Full record

ArticlePloS one2009

Archaeogenetic evidence of ancient nubian barley evolution from six to two-row indicates local adaptation.

Sarah A Palmer, Jonathan D Moore, Alan J Clapham, Pamela Rose, Robin G Allaby

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  10. Ancient genomics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  11. Article
  12. Article
  13. Article
  14. Diversity of North European oat analyzed by SSR, AFLP and DArT markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  15. Sunflower domestication alleles support single domestication center in eastern North America.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sarah A PalmerWarwick HRI, The University of Warwick, Wellesbourne, UK.
Jonathan D Moore
Alan J Clapham
Pamela Rose
Robin G Allaby

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArchaeobotanical samples of barley (Hordeum vulgare L.) found at Qasr Ibrim display a two-row phenotype that is unique to the region of archaeological sites upriver of the first cataract of the Nile, characterised by the development of distinctive lateral bracts. The phenotype occurs throughout all strata at Qasr Ibrim, which range in age from 3000 to a few hundred years. METHODOLOGY AND

findingsWe extracted ancient DNA from barley samples from the entire range of occupancy of the site, and studied the Vrs1 gene responsible for row number in extant barley. Surprisingly, we found a discord between the genotype and phenotype in all samples; all the barley had a genotype consistent with the six-row condition. These results indicate a six-row ancestry for the Qasr Ibrim barley, followed by a reassertion of the two-row condition. Modelling demonstrates that this sequence of evolutionary events requires a strong selection pressure.

conclusionsThe two-row phenotype at Qasr Ibrim is caused by a different mechanism to that in extant barley. The strength of selection required for this mechanism to prevail indicates that the barley became locally adapted in the region in response to a local selection pressure. The consistency of the genotype/phenotype discord over time supports a scenario of adoption of this barley type by successive cultures, rather than the importation of new barley varieties associated with individual cultures.

Indexed as

Adaptation, PhysiologicalArchaeologyBiological EvolutionDNA, PlantHordeumMolecular Sequence DataDNA, Plant

Identifiers

PMID19623249
PMCPMC2707625

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.