Evidence map›Paper›PMID 19620997›Full record

ReviewNature chemical biology2009

Evolution of efficient pathways for degradation of anthropogenic chemicals.

Shelley D Copley

Open access · greenAbstract readReview
In one paragraph

Review in Nature chemical biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 221 citations in OpenAlex.

  1. Review
  2. Review
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  6. Review
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  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Elucidating the Role of OACS environmental Au · 2024
    Article
  14. Evolution ofApplied and environmental microbiology · 2024
    Article
  15. Article
  16. Structure-guided approach to modulate small molecule binding to a promiscuous ligand-activated protein.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
  18. A conserved SH3-like fold in diverse putative proteins tetramerizes into an oxidoreductase providing an antimicrobial resistance phenotype.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  19. Review
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Shelley D CopleyDepartment of Molecular, Cellular and Developmental Biology and Cooperative Institute for Research in Environmental Sciences, University of Colorado at Boulder, Boulder, Colorado, USA. shelley@cires.colorado.edu
Cooperative Institute for Research in Environmental Sciences · US

Funding

Elucidation and Evolutionary Potential of a Latent Pathway for PLP SynthesisR01GM083285 · NIGMS · UNIVERSITY OF COLORADO · PI COPLEY, SHELLEY D. · 2008 to 2016
$2.3M
The Evolutionary Origin and Potential of Newly Recruited EnzymesR01GM078554 · NIGMS · UNIVERSITY OF COLORADO · PI COPLEY, SHELLEY D. · 2008 to 2011
$1.3M
NIGMS NIH HHS GM078554NIGMS NIH HHS R01 GM078554NIGMS NIH HHS R01 GM083285
6 · The paper itself

Abstract

Anthropogenic compounds used as pesticides, solvents and explosives often persist in the environment and can cause toxicity to humans and wildlife. The persistence of anthropogenic compounds is due to their recent introduction into the environment; microbes in soil and water have had relatively little time to evolve efficient mechanisms for degradation of these new compounds. Some anthropogenic compounds are easily degraded, whereas others are degraded very slowly or only partially, leading to accumulation of toxic products. This review examines the factors that affect the ability of microbes to degrade anthropogenic compounds and the mechanisms by which new pathways emerge in nature. New approaches for engineering microbes with enhanced degradative abilities include assembly of pathways using enzymes from multiple organisms, directed evolution of inefficient enzymes, and genome shuffling to improve microbial fitness under the challenging conditions posed by contaminated environments.

Indexed as

Soil MicrobiologyAnimalsBacteriaBinding SitesBiodegradation, EnvironmentalEnvironmental PollutantsEnzymesHumansModels, MolecularSubstrate SpecificityEnvironmental PollutantsEnzymes

Identifiers

PMID19620997
PMCPMC2867350
OpenAlexW2016215782

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.