Evidence map›Paper›PMID 19620282›Full record

ArticleMolecular and cellular biology2009

The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts.

Holly E Anderson, Josephine Wardle, Senay Vural Korkut, Heather E Murton, Luis López-Maury, Jürg Bähler, Simon K Whitehall

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. The longevity and reversibility of quiescence inCell cycle (Georgetown, Tex.) · 2023
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  3. Genetic interaction of the histone chaperonemicroPublication biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Holly E AndersonInstitute for Cell & Molecular Biosciences, Newcastle University, Framlington Place, Newcastle upon Tyne, UK.
Josephine Wardle
Senay Vural Korkut
Heather E Murton
Luis López-Maury
Jürg Bähler
Simon K Whitehall
Newcastle University · GBUniversity College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E014445/1Biotechnology and Biological Sciences Research Council C9546/A6517Cancer Research UK
6 · The paper itself

Abstract

The assembly of nucleosomes by histone chaperones is an important component of transcriptional regulation. Here, we have assessed the global roles of the HIRA histone chaperone in Schizosaccharomyces pombe. Microarray analysis indicates that inactivation of the HIRA complex results in increased expression of at least 4% of fission yeast genes. HIRA-regulated genes overlap with those which are normally repressed in vegetatively growing cells, such as targets of the Clr6 histone deacetylase and silenced genes located in subtelomeric regions. HIRA is also required for silencing of all 13 intact copies of the Tf2 long terminal repeat (LTR) retrotransposon. However, the role of HIRA is not restricted to bona fide promoters, because HIRA also suppresses noncoding transcripts from solo LTR elements and spurious antisense transcripts from cryptic promoters associated with transcribed regions. Furthermore, the HIRA complex is essential in the absence of the quality control provided by nuclear exosome-mediated degradation of illegitimate transcripts. This suggests that HIRA restricts genomic accessibility, and consistent with this, the chromosomes of cells lacking HIRA are more susceptible to genotoxic agents that cause double-strand breaks. Thus, the HIRA histone chaperone is required to maintain the protective functions of chromatin.

Indexed as

Gene Expression Regulation, FungalGene SilencingPromoter Regions, GeneticCell Cycle ProteinsDNA DamageDNA Transposable ElementsDown-RegulationGene Expression ProfilingHistonesMolecular ChaperonesMutagensMutationNuclear ProteinsRNA, AntisenseRNA, MessengerSchizosaccharomycesCell Cycle ProteinsDNA Transposable Elementship1 protein, S pombeHistonesMolecular ChaperonesMutagensNuclear ProteinsRNA, AntisenseRNA, MessengerSchizosaccharomyces pombe ProteinsSlm9 protein, S pombeTranscription Factors

Identifiers

PMID19620282
PMCPMC2738286
OpenAlexW1965767695

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.