Evidence map›Paper›PMID 19618466›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2009

Particle tracking model of electrophoretic morphogen movement reveals stochastic dynamics of embryonic gradient.

Ying Zhang, Michael Levin

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. The organelle of differentiation in embryos: the cell state splitter.Theoretical biology & medical modelling · 2016
    Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ying ZhangCenter for Regenerative and Developmental Biology, The Forsyth Institute, and Department of Developmental Biology, Harvard School of Dental Medicine, Boston, Massachusetts, USA.
Michael Levin

Funding

VOLTAMMETRIC DETECTION OF METAL IONSP41RR001395 · NCRR · MARINE BIOLOGICAL LABORATORY · PI SMITH, PETER JS · 1985 to 2010
$12.7M
Bioelectrical Controls of MorphogenesisR01GM077425 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI LEVIN, MICHAEL · 2007 to 2010
$1.1M
Specific ion flows: a novel signal mediating stem cell-niche communicationR21HD055850 · NICHD · TUFTS UNIVERSITY MEDFORD · PI LEVIN, MICHAEL · 2007 to 2008
$427k
NCRR NIH HHS P41 RR001395NICHD NIH HHS R21 HD055850NIGMS NIH HHS R01 GM077425NIGMS NIH HHS R01-GM077425
6 · The paper itself

Abstract

Some developmental events rely on an electrophoretic force to produce morphogenetic gradients. To quantitatively explore the dynamics of this process, we constructed a stochastic model of an early phase of left-right patterning: serotonin movement through the gap junction-coupled blastomeres of the Xenopus embryo. Particle-tracking simulations showed that a left-right gradient is formed rapidly, quickly reaching a final stable level. The voltage difference was critical for producing a morphogen gradient of the right steepness; gap junctional connectivity and morphogen mass determined the timing of the gradient. Endogenous electrophoresis drives approximately 50% of the particles across more than one cell width, and approximately 20% can travel across half the embryo. The stochastic behavior of the resulting gradients exhibited unexpected complexity among blastomeres' morphogen content, and showed how spatiotemporal variability within individual cells resulted in robust and consistent gradients across the embryonic left-right axis. Analysis of the distribution profile of gradient gain values made quantitative predictions about the conditions that result in the observed background level of laterality defects in unperturbed frog embryos. This work provides a general model that can be used to quantitatively analyze the unexpectedly complex dynamics of morphogens in a wide variety of systems.

Indexed as

Models, BiologicalAnimalsBody PatterningComputer SimulationElectrophoresisGap JunctionsSerotoninStochastic ProcessesXenopusSerotonin

Identifiers

PMID19618466
PMCPMC2915568

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.