Evidence map›Paper›PMID 19618401›Full record

ArticleInternational journal of cancer2010

Quantitative evaluation of DNA hypermethylation in malignant and benign breast tissue and fluids.

Weizhu Zhu, Wenyi Qin, John E Hewett, Edward R Sauter

Abstract read
In one paragraph

Article in International journal of cancer, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 109 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Methylation Profiles of BRCA1, RASSF1A and GSTP1 in Vietnamese Women with Breast CancerAsian Pacific journal of cancer prevention : APJCP · 2018
    Article
  9. Quantitative assessment of aberrantCancer management and research · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Weizhu ZhuDepartment of Research Affairs, University of North Dakota, Grand Forks, USA.
Wenyi Qin
John E Hewett
Edward R Sauter
University of North Dakota · USUniversity of Missouri · US

Funding

Epigenetic Effects of ResveratrolR21CA124818 · NCI · UNIVERSITY OF NORTH DAKOTA · PI SAUTER, EDWARD R · 2007 to 2008
$314k
NCI NIH HHS CA124818NCI NIH HHS R21 CA124818
6 · The paper itself

Abstract

The assessment of DNA had demonstrated altered methylation in malignant compared to benign breast tissue. The purpose of our study was to (i) confirm the predictive ability of methylation assessment in breast tissue, and (ii) use the genes found to be cancer predictive in tissue to evaluate the diagnostic potential of hypermethylation assessment in nipple aspirate fluid (NAF) and mammary ductoscopic (MD) samples. Quantitative methylation specific (qMS)-PCR was conducted on three specimen sets: 44 malignant (CA) and 34 normal (NL) tissue specimens, 18 matched CA, adjacent normal (ANL) tissue and NAF specimens, and 119 MD specimens. Training and validation tissue sets were analyzed to determine the optimal group of cancer predictive genes for NAF and MD analysis. NAF and MD cytologic review were also performed. Methylation of CCND-2, p16, RAR-beta and RASSF-1a was significantly more prevalent in tumor than in normal tissue specimens. Receiver operating characteristic curve analysis demonstrated an area under the curve of 0.96. For the 18 matched CA, ANL and NAF specimens, the four predictive genes identified in cancer tissue contained increased methylation in CA vs. ANL tissue; NAF samples had higher methylation than ANL specimens. Methylation frequency was higher in MD specimens from breasts with cancer than benign samples for p16 and RASSF-1a. In summary, i) routine quantitative DNA methylation assessment in NAF and MD samples is possible, and ii) genes hypermethylated in malignant breast tissue are also altered in matched NAF and in MD samples, and may be useful to assist in early breast cancer detection.

Indexed as

DNA MethylationAdultBreast NeoplasmsCyclin D2Cyclin-Dependent Kinase Inhibitor p16FemaleGenetic Predisposition to DiseaseHumansMammary Glands, HumanMiddle AgedNipple Aspirate FluidPolymerase Chain ReactionPredictive Value of TestsReceptors, Retinoic AcidTumor Suppressor ProteinsCCND2 protein, humanCyclin D2Cyclin-Dependent Kinase Inhibitor p16RASSF1 protein, humanReceptors, Retinoic Acidretinoic acid receptor betaTumor Suppressor Proteins

Identifiers

PMID19618401
PMCPMC3398695
OpenAlexW1973051534

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.