Evidence map›Paper›PMID 19617355›Full record

ArticleThe Journal of biological chemistry2009

Detailed mechanistic insights into HIV-1 sensitivity to three generations of fusion inhibitors.

Dirk Eggink, Johannes P M Langedijk, Alexandre M J J Bonvin, Yiqun Deng, Min Lu, Ben Berkhout, Rogier W Sanders

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 72 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Dirk EgginkLaboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam, Academic Medical Center of the University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.
Johannes P M Langedijk
Alexandre M J J Bonvin
Yiqun Deng
Min Lu
Ben Berkhout
Rogier W Sanders
Cornell University · USAcademic Medical Center · NLHKV (Netherlands) · NLUniversity of Applied Sciences Utrecht · NL

Funding

STRUCTURE AND FUNCTION OF THE HIV-1 ENVELOPE PROTEINR01AI042382 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LU, MIN · 1999 to 2008
$3.1M
Structure & Function of the HIV-1 Envelope ProteinR56AI042382 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LU, MIN · 2010 to 2010
$390k
STRUCTURE/FUNCTION OF THE HIV1 ENVELOPE PROTEINR21AI042382 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI LU, MIN · 1998 to 1998
–
NIAID NIH HHS AI42382NIAID NIH HHS R01 AI042382NIAID NIH HHS R56 AI042382
6 · The paper itself

Abstract

Peptides based on the second heptad repeat (HR2) of viral class I fusion proteins are effective inhibitors of virus entry. One such fusion inhibitor has been approved for treatment of human immunodeficiency virus-1 (T20, enfuvirtide). Resistance to T20 usually maps to the peptide binding site in HR1. To better understand fusion inhibitor potency and resistance, we combined virological, computational, and biophysical experiments with comprehensive mutational analyses and tested resistance to T20 and second and third generation inhibitors (T1249 and T2635). We found that most amino acid substitutions caused resistance to the first generation peptide T20. Only charged amino acids caused resistance to T1249, and none caused resistance to T2635. Depending on the drug, we can distinguish four mechanisms of drug resistance: reduced contact, steric obstruction, electrostatic repulsion, and electrostatic attraction. Implications for the design of novel antiviral peptide inhibitors are discussed.

Indexed as

Amino Acid SequenceBinding SitesCell Line, TumorCircular DichroismEnfuvirtideHIV-1HIV Envelope Protein gp41HIV Fusion InhibitorsHumansInhibitory Concentration 50Models, MolecularMolecular Sequence DataMutationPeptide FragmentsPeptidesProtein Structure, SecondaryEnfuvirtideHIV Envelope Protein gp41HIV Fusion InhibitorsPeptide FragmentsPeptidespeptide T1249T2635 peptide

Identifiers

PMID19617355
PMCPMC2785381
OpenAlexW2172113588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.