Evidence map›Paper›PMID 19615670›Full record

ArticleBiological psychiatry2009

Autism-associated haplotype affects the regulation of the homeobox gene, ENGRAILED 2.

Rym Benayed, Jiyeon Choi, Paul G Matteson, Neda Gharani, Silky Kamdar, Linda M Brzustowicz, James H Millonig

Abstract read
In one paragraph

Article in Biological psychiatry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. GABAergic System Dysfunction in Autism Spectrum Disorders.Frontiers in cell and developmental biology · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Aberrant Somatosensory Processing and Connectivity in Mice LackingThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  17. Functional Outcomes of Cerebellar Malformations.Frontiers in cellular neuroscience · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rym BenayedCenter for Advanced Biotechnology and Medicine, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Piscataway, New Jersey 08854-5638, USA.
Jiyeon Choi
Paul G Matteson
Neda Gharani
Silky Kamdar
Linda M Brzustowicz
James H Millonig
Rutgers, The State University of New Jersey · US

Funding

NIMH Center Repository Supporting Stem Cell ResearchU24MH068457 · NIMH · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRZUSTOWICZ, LINDA M, KNOWLES, JAMES A · 2003 to 2024
$213.8M
A Natonal Resource for Postmortem Brain ResearchR24MH068855 · NIMH · MC LEAN HOSPITAL (BELMONT, MA) · PI BENES, FRANCINE M. · 2003 to 2012
$14.8M
Genomewide Search--Autism Susceptibility Loci-supplementR01MH064547 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2002 to 2006
$9.6M
MINORITY RESEARCH TRAINING IN NEUROSCIENCET32MH018882 · NIMH · AMERICAN PSYCHOLOGICAL ASSOCIATION · PI MARTINEZ, JOSEPH L. · 1987 to 2009
$8.7M
Genetic Components of Autism Spectrum DisordersR01MH070366 · NIMH · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRZUSTOWICZ, LINDA M · 2003 to 2007
$3.6M
Identification and Functional Assessment of Autism Susceptibility GenesR01MH076435 · NIMH · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRZUSTOWICZ, LINDA M · 2005 to 2009
$2.4M
Identification and Functional Assessment of Autism Susceptibility GenesR01MH076624 · NIMH · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI MILLONIG, JAMES H. · 2005 to 2009
$2.1M
NIMH NIH HHS MH068457NIMH NIH HHS MH64547NIMH NIH HHS R01 MH064547NIMH NIH HHS R01 MH070366NIMH NIH HHS R01 MH076435NIMH NIH HHS R01 MH076624NIMH NIH HHS R01 MH70366NIMH NIH HHS R24 MH068855NIMH NIH HHS T32 MH018882NIMH NIH HHS T32MH018882NIMH NIH HHS U24 MH068457
6 · The paper itself

Abstract

backgroundAssociation analysis identified the homeobox transcription factor, ENGRAILED 2 (EN2), as a possible autism spectrum disorder (ASD) susceptibility gene (ASD [MIM 608636]; EN2 [MIM 131310]). The common alleles (underlined) of two intronic single nucleotide polymorphisms (SNPs), rs1861972 (A/G) and rs1861973 (C/T), are over-transmitted to affected individuals both singly and as a haplotype in three separate datasets (518 families total, haplotype p = .00000035).

methodsFurther support that EN2 is a possible ASD susceptibility gene requires the identification of a risk allele, a DNA variant that is consistently associated with ASD but is also functional. To identify possible risk alleles, additional association analysis and linkage disequilibrium (LD) mapping were performed. Candidate polymorphisms were then tested for functional differences by luciferase (Luc) reporter transfections and electrophoretic mobility shift assays (EMSAs).

resultsAssociation analysis of additional EN2 polymorphisms and LD mapping with Hapmap SNPs identified the rs1861972-rs1861973 haplotype as the most appropriate candidate to test for functional differences. Luciferase reporters for the two common rs1861972-rs1861973 haplotypes (A-C and G-T) were then transfected into human and rat cell lines as well as primary mouse neuronal cultures. In all cases the A-C haplotype resulted in a significant increase in Luc levels (p < .005). The EMSAs were then performed, and nuclear factors were bound specifically to the A and C alleles of both SNPs.

conclusionsThese data indicate that the A-C haplotype is functional and, together with the association and LD mapping results, supports EN2 as a likely ASD susceptibility gene and the A-C haplotype as a possible risk allele.

Indexed as

Genetic Predisposition to DiseaseAnimalsAnimals, NewbornAutistic DisorderElectrophoretic Mobility Shift AssayEngrailed 2 ProteinFamily HealthGene Expression RegulationGene FrequencyGenome-Wide Association StudyHaplotypesHomeodomain ProteinsHumansLuciferasesMiceMice, Inbred C57BLEngrailed 2 ProteinHomeodomain ProteinsLuciferasesNerve Tissue Proteins

Identifiers

PMID19615670
PMCPMC2783416
OpenAlexW2073913571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.