Evidence map›Paper›PMID 19609359›Full record

ArticlePLoS pathogens2009

Structural basis for functional tetramerization of lentiviral integrase.

Stephen Hare, Francesca Di Nunzio, Alfred Labeja, Jimin Wang, Alan Engelman, Peter Cherepanov

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 123 citations in OpenAlex.

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  11. Review
  12. Complex Relationships between HIV-1 Integrase and Its Cellular Partners.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Structure and function of retroviral integrase.Nature reviews. Microbiology · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Stephen HareDivision of Medicine, St. Mary's Campus, Imperial College London, London, United Kingdom.
Francesca Di Nunzio
Alfred Labeja
Jimin Wang
Alan Engelman
Peter Cherepanov
Imperial College London · GBDana-Farber Cancer Institute · USYale University · US

Funding

Integrase Structural VirologyR01AI070042 · NIAID · DANA-FARBER CANCER INST · PI ENGELMAN, ALAN N. · 2006 to 2020
$7.2M
Medical Research Council G0600009NIAID NIH HHS AI070042NIAID NIH HHS R01 AI070042
6 · The paper itself

Abstract

Experimental evidence suggests that a tetramer of integrase (IN) is the protagonist of the concerted strand transfer reaction, whereby both ends of retroviral DNA are inserted into a host cell chromosome. Herein we present two crystal structures containing the N-terminal and the catalytic core domains of maedi-visna virus IN in complex with the IN binding domain of the common lentiviral integration co-factor LEDGF. The structures reveal that the dimer-of-dimers architecture of the IN tetramer is stabilized by swapping N-terminal domains between the inner pair of monomers poised to execute catalytic function. Comparison of four independent IN tetramers in our crystal structures elucidate the basis for the closure of the highly flexible dimer-dimer interface, allowing us to model how a pair of active sites become situated for concerted integration. Using a range of complementary approaches, we demonstrate that the dimer-dimer interface is essential for HIV-1 IN tetramerization, concerted integration in vitro, and virus infectivity. Our structures moreover highlight adaptable changes at the interfaces of individual IN dimers that allow divergent lentiviruses to utilize a highly-conserved, common integration co-factor.

Indexed as

Crystallography, X-RayHIV-1HIV IntegraseIntegrasesIntercellular Signaling Peptides and ProteinsModels, MolecularMutationProtein Interaction Domains and MotifsProtein MultimerizationViral ProteinsVisna-maedi virusvpr Gene Products, Human Immunodeficiency VirusHIV IntegraseIntegrasesIntercellular Signaling Peptides and Proteinslens epithelium-derived growth factorp31 integrase protein, Human immunodeficiency virus 1Viral Proteinsvpr Gene Products, Human Immunodeficiency Virusvpr protein, Human immunodeficiency virus 1

Identifiers

PMID19609359
PMCPMC2705190
OpenAlexW1997754834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.