Evidence map›Paper›PMID 19608859›Full record

ArticleScience (New York, N.Y.)2009

Structure and mechanism of a Na+-independent amino acid transporter.

Paul L Shaffer, April Goehring, Aruna Shankaranarayanan, Eric Gouaux

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 198 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
198citing papers in PubMed, 1 pooled it
22.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

198 citing papers in PubMed, 1 synthesis or guideline pooled it, 317 citations in OpenAlex.

  1. Pooled it
  2. Structure and conformational dynamics of the Pseudomonas CbrA transceptor.Protein science : a publication of the Protein Society · 2026
    Article
  3. Article
  4. Structure and conformational dynamics of thebioRxiv : the preprint server for biology · 2026
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  14. Cryo-EM structures reveal the HLife science alliance · 2025
    Article
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  16. Article
  17. Review
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  19. Review
  20. Article

138 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Paul L ShafferVollum Institute, Oregon Health and Science University, 3181 Southwest Sam Jackson Park Road, Portland, OR 97239, USA.
April Goehring
Aruna Shankaranarayanan
Eric Gouaux
Oregon Health & Science University · USVollum Institute · US

Funding

Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2005 to 2009
$16.8M
TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
Structure and Function of Neurotransmitter TransportersR01MH070039 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOUAUX, JAMES E · 2004 to 2024
$4.1M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM008281NIGMS NIH HHS U54 GM075026NIMH NIH HHS R01 MH070039
6 · The paper itself

Abstract

Amino acid, polyamine, and organocation (APC) transporters are secondary transporters that play essential roles in nutrient uptake, neurotransmitter recycling, ionic homeostasis, and regulation of cell volume. Here, we present the crystal structure of apo-ApcT, a proton-coupled broad-specificity amino acid transporter, at 2.35 angstrom resolution. The structure contains 12 transmembrane helices, with the first 10 consisting of an inverted structural repeat of 5 transmembrane helices like the leucine transporter LeuT. The ApcT structure reveals an inward-facing, apo state and an amine moiety of lysine-158 located in a position equivalent to the sodium ion site Na2 of LeuT. We propose that lysine-158 is central to proton-coupled transport and that the amine group serves the same functional role as the Na2 ion in LeuT, thus demonstrating common principles among proton- and sodium-coupled transporters.

Indexed as

Amino AcidsAmino Acid SequenceAmino Acid Transport SystemsAntiportersApoproteinsArchaeal ProteinsCrystallizationCrystallography, X-RayEscherichia coli ProteinsMethanococcusModels, MolecularMolecular Sequence DataProtein ConformationProtein FoldingProtein Structure, SecondaryProtonsAdiC protein, E coliAmino AcidsAmino Acid Transport SystemsAntiportersApoproteinsArchaeal ProteinsEscherichia coli ProteinsProtonsSodium

Identifiers

PMID19608859
PMCPMC2851542
OpenAlexW2074274532

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.