Evidence map›Paper›PMID 19608742›Full record

ArticleThe Journal of biological chemistry2009

Rhythmic expression of microRNA-26a regulates the L-type voltage-gated calcium channel alpha1C subunit in chicken cone photoreceptors.

Liheng Shi, Michael L Ko, Gladys Y-P Ko

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Review
  6. Circadian regulation in the retina: From molecules to network.The European journal of neuroscience · 2020
    Review
  7. Article
  8. Article
  9. Nascent-Seq analysis of Drosophila cycling gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  10. Article
  11. Article
  12. Article
  13. The physiological impact of microRNA gene regulation in the retina.Cellular and molecular life sciences : CMLS · 2012
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. miR-204 is required for lens and retinal development via Meis2 targeting.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Liheng ShiDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843-4458, USA.
Michael L Ko
Gladys Y-P Ko
Texas A&M University · US

Funding

WASTE SITE ASSESSMENTP42ES004917 · NIEHS · TEXAS A&M UNIVERSITY SYSTEM · PI SAFE, STEPHEN H. · 1989 to 2009
$10.4M
Pilot--Health Science ResearchP30ES009106 · NIEHS · TEXAS A&M UNIVERSITY SYSTEM · PI SAFE, STEPHEN H. · 1998 to 2006
$9.2M
Circadian Rhythm In Cone Photoreceptors: Cellular MechanismsR01EY017452 · NEI · TEXAS A&M UNIVERSITY · PI KO, GLADYS Y · 2007 to 2012
$1.8M
ACQUISITION OF A CONFOCAL/MULTIPHOTON MICROSCOPY SYSTEMS10RR022532 · NCRR · TEXAS A&M UNIVERSITY · PI BURGHARDT, ROBERT C · 2006 to 2006
$499k
NCRR NIH HHS S10 RR022532NCRR NIH HHS S10RR022532NEI NIH HHS R01 EY017452NEI NIH HHS R01EY017452NIEHS NIH HHS P30 ES009106NIEHS NIH HHS P30ES009106NIEHS NIH HHS P42 ES004917NIEHS NIH HHS P42ES004917
6 · The paper itself

Abstract

MicroRNAs (miRNAs) modulate gene expression by degrading or inhibiting translation of messenger RNAs (mRNAs). Here, we demonstrated that chicken microRNA-26a (gga-mir-26a) is a key posttranscriptional regulator of photoreceptor L-type voltage-gated calcium channel alpha1C subunit (L-VGCCalpha1C) expression, and its own expression has a diurnal rhythm, thereby explaining the rhythmic nature of L-VGCCalpha1Cs. Circadian oscillators in retinal photoreceptors provide a mechanism that allows photoreceptors to anticipate daily illumination changes. In photoreceptors, L-VGCC activities are under circadian control, which are higher at night and lower during the day. Interestingly, the mRNA level of VGCCalpha1D oscillates, but those for VGCCalpha1C do not. However, the protein expression of both VGCCalpha1C and alpha1D are higher at night in cone photoreceptors. The underlying mechanism regulating L-VGCCalpha1C protein expression was not clear until now. In vitro targeting reporter assays verified that gga-mir-26a specifically targeted the L-VGCCalpha1C 3'-untranslated region, and gga-mir-26a expression in the retina peaked during the day. After transfection with gga-mir-26a, L-VGCCalpha1C protein expression and L-VGCC current density decreased. Therefore, the rhythmic expression of gga-mir-26a regulated the protein expression of the L-VGCCalpha1C subunit. Additionally, both CLOCK (circadian locomoter output cycles kaput) and CREB (cAMP-response element-binding protein-1) activated gga-mir-26a expression in vitro. This result implies that gga-mir-26a might be a downstream target of circadian oscillators. Our work has uncovered new functional roles for miRNAs in the regulation of circadian rhythms in cone photoreceptors. Circadian regulated miRNAs could serve as the link between the core oscillator and output signaling that further govern biological functions.

Indexed as

3' Untranslated RegionsAnimalsBiological ClocksCalcium Channels, L-TypeChickensChlorocebus aethiopsCircadian RhythmCLOCK ProteinsCOS CellsCyclic AMP Response Element-Binding ProteinGene Expression RegulationMicroRNAsRetinal Cone Photoreceptor CellsTrans-Activators3' Untranslated RegionsCalcium Channels, L-TypeCLOCK ProteinsCyclic AMP Response Element-Binding ProteinMicroRNAsTrans-Activators

Identifiers

PMID19608742
PMCPMC2757981
OpenAlexW2052908582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.