Evidence map›Paper›PMID 19607843›Full record

ArticleJournal of molecular biology2009

Toxoplasma H2A variants reveal novel insights into nucleosome composition and functions for this histone family.

Maria C Dalmasso, David O Onyango, Arunasalam Naguleswaran, William J Sullivan, Sergio O Angel

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 66 citations in OpenAlex.

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  7. Proteomics Applications inPathogens (Basel, Switzerland) · 2023
    Review
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  10. Histone variant H2B.Z acetylation is necessary for maintenance ofbioRxiv : the preprint server for biology · 2023
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  11. Unravelling the sexual developmental biology ofFrontiers in cellular and infection microbiology · 2023
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  16. Modulation Effects ofVaccines · 2020
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  17. A Comparison of Stage Conversion in the Coccidian ApicomplexansFrontiers in cellular and infection microbiology · 2020
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  18. Emerging Therapeutic Targets AgainstFrontiers in cellular and infection microbiology · 2020
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  19. Evaluation of ATM Kinase Inhibitor KU-55933 as Potential Anti-Frontiers in cellular and infection microbiology · 2019
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  20. Gene Expression Profiling ofFrontiers in cellular and infection microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Maria C DalmassoInstituto de Investigaciones Biotecnológicas-Instituto Tecnologico Chascomús, UNSAM-CONICET, Argentina.
David O Onyango
Arunasalam Naguleswaran
William J Sullivan
Sergio O Angel
Indiana University School of MedicineConsejo Nacional de Investigaciones Científicas y Técnicas · ARIndiana University – Purdue University Indianapolis · US

Funding

GCN5-mediated transcription in AIDS pathogen ToxoplasmaR01AI077502 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SULLIVAN, WILLIAM J · 2009 to 2013
$1.8M
APEs as novel drug targets in AIDS opportunistic pathogen ToxoplasmaR21AI073091 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SULLIVAN, WILLIAM J · 2007 to 2008
$412k
GCN5-mediated transcription in AIDS pathogen ToxoplasmaR56AI077502 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SULLIVAN, WILLIAM J · 2008 to 2008
$308k
NIAID NIH HHS AI073091NIAID NIH HHS AI077502NIAID NIH HHS R01 AI077502NIAID NIH HHS R21 AI073091NIAID NIH HHS R56 AI077502
6 · The paper itself

Abstract

Toxoplasma gondii is an obligate intracellular parasite. Toxoplasmosis is incurable because of its ability to differentiate from the rapidly replicating tachyzoite stage into a latent cyst form (bradyzoite stage). Gene regulation pertinent to Toxoplasma differentiation involves histone modification, but very little is known about the histone proteins in this early branching eukaryote. Here, we report the characterization of three H2A histones, variants H2AX and H2AZ, and a canonical H2A1. H2AZ is the minor parasite H2A member. H2A1 and H2AX both have an SQ motif, but only H2AX has a complete SQ(E/D)varphi (where varphi denotes a hydrophobic residue) known to be phosphorylated in response to DNA damage. We show that a novel H2B variant interacts with H2AZ and H2A1 but not with H2AX. Chromatin immunoprecipitation (ChIP) revealed that H2AZ and H2Bv are enriched at active genes while H2AX is enriched at repressed genes as well as the silent TgIRE repeat element. During DNA damage, we detected an increase in H2AX phosphorylation as well as increases in h2a1 and h2ax transcription. We found that expression of h2ax, but not h2a1 or h2az, increases in bradyzoites generated in vitro. Similar analysis performed on mature bradyzoites generated in vivo, which are arrested in G0, showed that h2az and h2ax are expressed but h2a1 is not, consistent with the idea that h2a1 is the canonical histone orthologue in the parasite. The increase of H2AX, which localizes to silenced areas during bradyzoite differentiation, is consistent with the quiescent nature of this stage of the life cycle. Our results indicate that the early-branching eukaryotic parasite Toxoplasma contains nucleosomes of novel composition, which is likely to impact multiple facets of parasite biology, including the clinically important process of bradyzoite differentiation.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsChromatin ImmunoprecipitationDNA, ProtozoanHistonesMolecular Sequence DataMutant ProteinsNucleosomesProtein BindingProtozoan ProteinsSequence AlignmentToxoplasmaDNA, ProtozoanHistonesMutant ProteinsNucleosomesProtozoan Proteins

Identifiers

PMID19607843
PMCPMC2734877
OpenAlexW2142407238

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.