Evidence map›Paper›PMID 19606141›Full record

ArticleNature2009

The genome of the blood fluke Schistosoma mansoni.

Matthew Berriman, Brian J Haas, Philip T LoVerde, R Alan Wilson, Gary P Dillon, Gustavo C Cerqueira, Susan T Mashiyama, Bissan Al-Lazikani, Luiza F Andrade, Peter D Ashton and 46 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 550 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
550citing papers in PubMed, 2 pooled it
64.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

550 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,075 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Review
  4. Article
  5. Article
  6. Article
  7. Peptidomic Identification of Behaviour-Modulating Putative Neuropeptides inInternational journal of molecular sciences · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Lipidomic Profile of Individuals Infected byInternational journal of molecular sciences · 2025
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  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

490 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

56 authors at 20 institutions in 8 countries.

Matthew BerrimanWellcome Trust Sanger Institute, Cambridge CB10 1SD, UK. mb4@sanger.ac.uk
Brian J Haas
Philip T LoVerde
R Alan Wilson
Gary P Dillon
Gustavo C Cerqueira
Susan T Mashiyama
Bissan Al-Lazikani
Luiza F Andrade
Peter D Ashton
Martin A Aslett
Daniella C Bartholomeu
Gaelle Blandin
Conor R Caffrey
Avril Coghlan
Richard Coulson
Tim A Day
Art Delcher
Ricardo DeMarco
Appolinaire Djikeng
Tina Eyre
John A Gamble
Elodie Ghedin
Yong Gu
Christiane Hertz-Fowler
Hirohisha Hirai
Yuriko Hirai
Robin Houston
Alasdair Ivens
David A Johnston
Daniela Lacerda
Camila D Macedo
Paul McVeigh
Zemin Ning
Guilherme Oliveira
John P Overington
Julian Parkhill
Mihaela Pertea
Raymond J Pierce
Anna V Protasio
Michael A Quail
Marie-Adèle Rajandream
Jane Rogers
Mohammed Sajid
Steven L Salzberg
Mario Stanke
Adrian R Tivey
Owen White
David L Williams
Jennifer Wortman
Wenjie Wu
Mostafa Zamanian
Adhemar Zerlotini
Claire M Fraser-Liggett
Barclay G Barrell
Najib M El-Sayed
Wellcome Sanger Institute · GBJ. Craig Venter Institute · USUniversity of Maryland, College Park · USIowa State University · USUniversity of Southampton · GBFundação Oswaldo Cruz · BRInstitute of Bioinformatics · INKyoto University · JPThe University of Texas Health Science Center at San Antonio · USUniversity of Maryland, Baltimore · USUniversity of Pittsburgh · USUniversity of York · GBWellcome Trust · GBBroad Institute · USCancer Research UK · GBInstitute of Cancer Research · GBInstitut Pasteur de Lille · FRJohn Innes Centre · GBUniversidade de São Paulo · BRUniversity at Buffalo, State University of New York · US

Funding

COMPUTATIONAL MODELING OF GENES AND GENE STRUCTURER01LM006845 · NLM · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 1999 to 2010
$5.9M
Laying the Foundation of Genomic EnzymologyR01GM060595 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BABBITT, PATRICIA CLEMENT · 2000 to 2018
$5.4M
SEQUENCING 12 MB OF THE SCHISTOSOMA MANSONI GENOMEU01AI048828 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 2001 to 2002
$4.9M
Bioinformatics Software for Analyzing Microbial GenomesR01GM083873 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 2008 to 2017
$2.1M
INFORMATICS TRAINING FOR BRAZILIAN VECTOR AND PARASITIC DISEASED43TW007012 · FIC · UNIVERSITY OF GEORGIA (UGA) · PI KISSINGER, JESSICA C · 2004 to 2013
$1.9M
New Approaches to Schistosome vaccine antigen discoveryR01AI054711 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KING, CHRISTOPHER L · 2005 to 2008
$1.4M
Training to Enhance Schistosomiasis Research in BrazilD43TW006580 · FIC · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI LOVERDE, PHILIP T · 2003 to 2007
$726k
FIC NIH HHS 5D43TW006580FIC NIH HHS 5D43TW007012-03FIC NIH HHS D43 TW006580FIC NIH HHS D43 TW007012NIAID NIH HHS AI054711-01A2NIAID NIH HHS AI48828NIAID NIH HHS R01 AI054711NIAID NIH HHS U01 AI048828NIGMS NIH HHS R01 GM060595NIGMS NIH HHS R01 GM083873NLM NIH HHS R01 LM006845Wellcome Trust 086151Wellcome Trust WT085775/Z/08/Z
6 · The paper itself

Abstract

Schistosoma mansoni is responsible for the neglected tropical disease schistosomiasis that affects 210 million people in 76 countries. Here we present analysis of the 363 megabase nuclear genome of the blood fluke. It encodes at least 11,809 genes, with an unusual intron size distribution, and new families of micro-exon genes that undergo frequent alternative splicing. As the first sequenced flatworm, and a representative of the Lophotrochozoa, it offers insights into early events in the evolution of the animals, including the development of a body pattern with bilateral symmetry, and the development of tissues into organs. Our analysis has been informed by the need to find new drug targets. The deficits in lipid metabolism that make schistosomes dependent on the host are revealed, and the identification of membrane receptors, ion channels and more than 300 proteases provide new insights into the biology of the life cycle and new targets. Bioinformatics approaches have identified metabolic chokepoints, and a chemogenomic screen has pinpointed schistosome proteins for which existing drugs may be active. The information generated provides an invaluable resource for the research community to develop much needed new control tools for the treatment and eradication of this important and neglected disease.

Indexed as

AnimalsBiological EvolutionExonsGenes, HelminthGenome, HelminthHost-Parasite InteractionsIntronsMolecular Sequence DataPhysical Chromosome MappingSchistosoma mansoniSchistosomiasis mansoni

Identifiers

PMID19606141
PMCPMC2756445
OpenAlexW2094169801

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.