Evidence map›Paper›PMID 19605687›Full record

ArticleGenes & development2009

SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes.

Zsofia Palfi, Nicolas Jaé, Christian Preusser, Katarzyna H Kaminska, Janusz M Bujnicki, Ju Huck Lee, Arthur Günzl, Christian Kambach, Henning Urlaub, Albrecht Bindereif

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  4. Frontiers in immunology · 2020
    Article
  5. Article
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  10. Review
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  12. A day in the life of the spliceosome.Nature reviews. Molecular cell biology · 2014
    Review
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Zsofia PalfiInstitute of Biochemistry, Justus Liebig University of Giessen, Giessen, Germany.
Nicolas Jaé
Christian Preusser
Katarzyna H Kaminska
Janusz M Bujnicki
Ju Huck Lee
Arthur Günzl
Christian Kambach
Henning Urlaub
Albrecht Bindereif
University of Giessen · DEInternational Institute of Molecular and Cell Biology · PLUConn Health · USMax Planck Institute for Biophysical Chemistry · DEPaul Scherrer Institute · CH

Funding

Multifunctional class I transcription in T. bruceiR01AI059377 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GUNZL, ARTHUR · 2004 to 2013
$3.4M
NIAID NIH HHS AI059377NIAID NIH HHS R01 AI059377
6 · The paper itself

Abstract

Spliceosomal small nuclear ribonucleoproteins (snRNPs) in trypanosomes contain either the canonical heptameric Sm ring (U1, U5, spliced leader snRNPs), or variant Sm cores with snRNA-specific Sm subunits (U2, U4 snRNPs). Searching for specificity factors, we identified SMN and Gemin2 proteins that are highly divergent from known orthologs. SMN is splicing-essential in trypanosomes and nuclear-localized, suggesting that Sm core assembly in trypanosomes is nuclear. We demonstrate in vitro that SMN is sufficient to confer specificity of canonical Sm core assembly and to discriminate against binding to nonspecific RNA and to U2 and U4 snRNAs. SMN interacts transiently with the SmD3B subcomplex, contacting specifically SmB. SMN remains associated throughout the assembly of the Sm heteroheptamer and dissociates only when a functional Sm site is incorporated. These data establish a novel role of SMN, mediating snRNP specificity in Sm core assembly, and yield new biochemical insight into the mechanism of SMN activity.

Indexed as

Amino Acid SequenceAnimalsMolecular ChaperonesMolecular Sequence DataNuclear ProteinsRibonucleoproteins, Small NuclearSequence AlignmentSMN Complex ProteinssnRNP Core ProteinsSpliceosomesTrypanosoma brucei bruceiMolecular ChaperonesNuclear ProteinsRibonucleoproteins, Small NuclearSMN Complex ProteinssnRNP Core Proteins

Identifiers

PMID19605687
PMCPMC2714709
OpenAlexW2096888505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.