Evidence map›Paper›PMID 19605566›Full record

ArticleThe American journal of clinical nutrition2009

Novel variants at KCTD10, MVK, and MMAB genes interact with dietary carbohydrates to modulate HDL-cholesterol concentrations in the Genetics of Lipid Lowering Drugs and Diet Network Study.

Mireia Junyent, Laurence D Parnell, Chao-Qiang Lai, Yu-Chi Lee, Caren E Smith, Donna K Arnett, Michael Y Tsai, Edmond K Kabagambe, Robert J Straka, Michael Province and 3 more

Abstract read
In one paragraph

Article in The American journal of clinical nutrition, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Differences in Weight Loss Between Persons on Standard Balanced vs Nutrigenetic Diets in a Randomized Controlled Trial.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2015
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  14. The effect ofOncotarget · 2017
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  15. Association between theOncotarget · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Mireia JunyentJM-USDA-HNRCA at Tufts University, Boston, MA 02111, USA. mireia.junyent@tufts.edu
Laurence D Parnell
Chao-Qiang Lai
Yu-Chi Lee
Caren E Smith
Donna K Arnett
Michael Y Tsai
Edmond K Kabagambe
Robert J Straka
Michael Province
Ping An
Ingrid Borecki
José M Ordovás
Tufts University · USWashington University in St. Louis · USUniversity of Alabama at Birmingham · US

Funding

Genetic and Environmental Determinants of TriglyceridesU01HL072524 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 2002 to 2008
$11.9M
Genomewide Association Study of Lipid Response to Fenofibrate and Dietary FatR01HL091357 · NHLBI · UNIVERSITY OF KENTUCKY · PI ARNETT, DONNA K · 2008 to 2018
$5.8M
GENE/DIET EFFECTS ON PLASMA LIPOPROTEIN LEVELSR01HL054776 · NHLBI · TUFTS UNIVERSITY BOSTON · PI ORDOVAS, JOSE M. · 1996 to 2010
$2.6M
TRAINING PROGRAM IN HUMAN NUTRITION AND METABOLISMT32DK007651 · NIDDK · TUFTS UNIVERSITY BOSTON · PI MASON, JOEL B · 1990 to 2009
$1.9M
NHLBI NIH HHS HL-54776NHLBI NIH HHS R01 HL091357NHLBI NIH HHS U01 HL072524NHLBI NIH HHS U01 HL72524NIDDK NIH HHS DK075030NIDDK NIH HHS T32 DK007651NIDDK NIH HHS T32 DK007651-19
6 · The paper itself

Abstract

backgroundSeveral genome-wide association studies have identified novel loci (KCTD10, MVK, and MMAB) that are associated with HDL-cholesterol concentrations. Of the environmental factors that determine HDL cholesterol, high-carbohydrate diets have been shown to be associated with low concentrations.

objectiveThe objective was to evaluate the associations of 8 single nucleotide polymorphisms (SNPs) located within the KCTD10, MVK, and MMAB loci with lipids and their potential interactions with dietary carbohydrates.

designKCTD10, MVK, and MMAB SNPs were genotyped in 920 subjects (441 men and 479 women) who participated in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study. Biochemical measurements were made by using standard procedures. Dietary intakes were estimated by using a validated questionnaire.

resultsFor the SNPs KCTD10_i5642G-->C and MVK_S52NG-->A, homozygotes for the major alleles (G) had lower HDL-cholesterol concentrations than did carriers of the minor alleles (P = 0.005 and P = 0.019, respectively). For the SNP 12inter_108466061A-->G, homozygotes for the minor allele (G) had higher total cholesterol and LDL-cholesterol concentrations than did AG subjects (P = 0.030 and P = 0.034, respectively). Conversely, homozygotes for the major allele (G) at MMAB_3U3527G-->C had higher LDL-cholesterol concentrations than did carriers of the minor allele (P = 0.034). Significant gene-diet interactions for HDL cholesterol were found (P < 0.001-0.038), in which GG subjects at SNPs KCTD10_i5642G-->C and MMAB_3U3527G-->C and C allele carriers at SNP KCTD10_V206VT-->C had lower concentrations only if they consumed diets with a high carbohydrate content (P < 0.001-0.011).

conclusionThese findings suggest that the KCTD10 (V206VT-->C and i5642G-->C) and MMAB_3U3527G-->C variants may contribute to the variation in HDL-cholesterol concentrations, particularly in subjects with high carbohydrate intakes.

Indexed as

DietAdultAgedAlkyl and Aryl TransferasesCholesterol, HDLDietary CarbohydratesDiet SurveysEpigenesis, GeneticFemaleGenome-Wide Association StudyHumansHyperlipidemiasMaleMiddle AgedPhosphotransferases (Alcohol Group Acceptor)Polymorphism, Single NucleotideAlkyl and Aryl TransferasesCholesterol, HDLcob(I)alamin adenosyltransferaseDietary CarbohydratesKCTD10 protein, humanmevalonate kinasePhosphotransferases (Alcohol Group Acceptor)Potassium Channels, Voltage-Gated

Identifiers

PMID19605566
PMCPMC2728650
OpenAlexW2152533544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.