Evidence map›Paper›PMID 19605348›Full record

ArticleThe Journal of biological chemistry2009

Phosphorylated intrinsically disordered region of FACT masks its nucleosomal DNA binding elements.

Yasuo Tsunaka, Junko Toga, Hiroto Yamaguchi, Shin-ichi Tate, Susumu Hirose, Kosuke Morikawa

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The Histone Chaperone Network Is Highly Conserved inInternational journal of molecular sciences · 2023
    Article
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  13. Structure and function of the histone chaperone FACT - Resolving FACTual issues.Biochimica et biophysica acta. Gene regulatory mechanisms · 2018
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Yasuo TsunakaTakara-Bio Endowed Laboratory, Institute for Protein Research, Osaka University, Suita, Osaka 565-0874, Japan.
Junko Toga
Hiroto Yamaguchi
Shin-ichi Tate
Susumu Hirose
Kosuke Morikawa
Takara (Japan) · JPHiroshima University · JPJapan Society for the Promotion of Science · JPNational Institute of Genetics · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

FACT is a heterodimer of SPT16 and SSRP1, which each contain several conserved regions in the primary structure. The interaction of FACT with nucleosomes induces chromatin remodeling through the combinatorial action of its distinct functional protein regions. However, there is little mechanistic insight into how these regions cooperatively contribute to FACT functions, particularly regarding the recognition of nucleosomal DNA. Here, we report the identification of novel phosphorylation sites of Drosophila melanogaster FACT (dFACT) expressed in Sf9 cells. These sites are densely concentrated in the acidic intrinsically disordered (ID) region of the SSRP1 subunit and control nucleosomal DNA binding by dFACT. This region and the adjacent segment of the HMG domain form weak electrostatic intramolecular interactions, which is reinforced by the phosphorylation, thereby blocking DNA binding competitively. Importantly, this control mechanism appears to support rapid chromatin transactions during early embryogenesis through the dephosphorylation of some sites in the maternally transmitted dSSRP1.

Indexed as

AnimalsCarrier ProteinsChromatin Assembly and DisassemblyDNADNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryonic DevelopmentEmbryo, NonmammalianHigh Mobility Group ProteinsNucleosomesPhosphorylationProtein Structure, TertiaryTranscriptional Elongation FactorsCarrier ProteinsDNADNA-Binding ProteinsDrosophila ProteinsFACT protein, DrosophilaHigh Mobility Group ProteinsNucleosomesSSRP protein, DrosophilaTranscriptional Elongation Factors

Identifiers

PMID19605348
PMCPMC2782050
OpenAlexW2067087310

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.