Evidence map›Paper›PMID 19605346›Full record

ArticleThe Journal of biological chemistry2009

Novel DNA binding properties of the Mcm10 protein from Saccharomyces cerevisiae.

Shlomo Eisenberg, George Korza, John Carson, Ivan Liachko, Bik-Kwoon Tye

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Mechanism of eukaryotic origin unwinding is a dual helicase DNA shearing process.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  12. Article
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  15. MCM10: one tool for all-Integrity, maintenance and damage control.Seminars in cell & developmental biology · 2014
    Review
  16. Article
  17. Enigmatic roles of Mcm10 in DNA replication.Trends in biochemical sciences · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Shlomo EisenbergDepartment of Molecular, Microbial, and Structural Biology, The University of Connecticut Medical School, Farmington, Connecticut 06030, USA. seisenberg@nso2.uchc.edu
George Korza
John Carson
Ivan Liachko
Bik-Kwoon Tye
University of Connecticut · USCornell University · US

Funding

POLARITY IN NETWORKS AND PATHWAYS(RMI)U54RR022232 · NCRR · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI LOEW, LESLIE M · 2005 to 2009
$12.9M
RNA Trafficking in Neural Cells.R01NS015190 · NINDS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI CARSON, JOHN H · 1985 to 2009
$2.4M
Regulator of DNA Replication & Gene Expression in YeastR01GM072557 · NIGMS · CORNELL UNIVERSITY · PI TYE, BIK-KWOON · 2006 to 2009
$1.2M
RNA trafficking in neural cellsR56NS015190 · NINDS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI CARSON, JOHN H · 2007 to 2007
$364k
NCRR NIH HHS RR022232NCRR NIH HHS U54 RR022232NIGMS NIH HHS GM072557NIGMS NIH HHS R01 GM072557NINDS NIH HHS NS15190NINDS NIH HHS R01 NS015190NINDS NIH HHS R56 NS015190
6 · The paper itself

Abstract

The Mcm10 protein is essential for chromosomal DNA replication in eukaryotic cells. We purified the Saccharomyces cerevisiae Mcm10 (ScMcm10) and characterized its DNA binding properties. Electrophoretic mobility shift assays and surface plasmon resonance analysis showed that ScMcm10 binds stably to both double strand (ds) DNA and single strand (ss) DNA. On short DNA templates of 25 or 50 bp, surface plasmon resonance analysis showed a approximately 1:1 stoichiometry of ScMcm10 to dsDNA. On longer dsDNA templates, however, multiple copies of ScMcm10 cooperated in the rapid assembly of a large, stable nucleoprotein complex. The amount of protein bound was directly proportional to the length of the DNA, with an average occupancy spacing of 21-24 bp. This tight spacing is consistent with a nucleoprotein structure in which ScMcm10 is aligned along the helical axis of the dsDNA. In contrast, the stoichiometry of ScMcm10 bound to ssDNA of 20-50 nucleotides was approximately 3:1 suggesting that interaction with ssDNA induces the assembly of a multisubunit ScMcm10 complex composed of at least three subunits. The tight packing of ScMcm10 on dsDNA and the assembly of a multisubunit complex on ssDNA suggests that, in addition to protein-DNA, protein-protein interactions may be involved in forming the nucleoprotein complex. We propose that these DNA binding properties have an important role in (i) initiation of DNA replication and (ii) formation and maintenance of a stable replication fork during the elongation phase of chromosomal DNA replication.

Indexed as

BuffersCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNADNA ReplicationEscherichia coliGenes, FungalGlycerolMinichromosome Maintenance ProteinsModels, BiologicalOligonucleotidesProtein BindingProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNABuffersCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNAGlycerolMCM10 protein, S cerevisiaeMinichromosome Maintenance ProteinsOligonucleotidesSaccharomyces cerevisiae Proteins

Identifiers

PMID19605346
PMCPMC2757242
OpenAlexW2089507709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.