Evidence map›Paper›PMID 19602197›Full record

ArticleTraffic (Copenhagen, Denmark)2009

Mechanism and a peptide motif for targeting peripheral proteins to the yeast inner nuclear membrane.

Tsung-Po Lai, Karen A Stauffer, Athulaprabha Murthi, Hussam H Shaheen, Gang Peng, Nancy C Martin, Anita K Hopper

Open access · greenAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Human TRMT1 catalyzes mScience China. Life sciences · 2023
    Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. tRNA biology charges to the front.Genes & development · 2010
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Tsung-Po LaiDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.
Karen A Stauffer
Athulaprabha Murthi
Hussam H Shaheen
Gang Peng
Nancy C Martin
Anita K Hopper
The Ohio State University · USFudan University · CNPennsylvania State University · USUniversity of Louisville · US

Funding

YEAST GENES IN RNA PROCESSING &NUCLEUS/CYTOSOL EXCHANGER01GM027930 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HOPPER, ANITA K · 1985 to 2014
$4.6M
NIGMS NIH HHS GM27930NIGMS NIH HHS R01 GM027930
6 · The paper itself

Abstract

Trm1 is a tRNA specific m(2)(2)G methyltransferase shared by nuclei and mitochondria in Saccharomyces cerevisiae. In nuclei, Trm1 is peripherally associated with the inner nuclear membrane (INM). We investigated the mechanism delivering/tethering Trm1 to the INM. Analyses of mutations of the Ran pathway and nuclear pore components showed that Trm1 accesses the nucleoplasm via the classical nuclear import pathway. We identified a Trm1 cis-acting sequence sufficient to target passenger proteins to the INM. Detailed mutagenesis of this region uncovered specific amino acids necessary for authentic Trm1 to locate at the INM. The INM information is contained within a sequence of less than 20 amino acids, defining the first motif for addressing a peripheral protein to this important subnuclear location. The combined studies provide a multi-step process to direct Trm1 to the INM: (i) translation in the cytoplasm; (ii) Ran-dependent import into the nucleoplasm; and (iii) redistribution from the nucleoplasm to the INM via the INM motif. Furthermore, we demonstrate that the Trm1 mitochondrial targeting and nuclear localization signals are in competition with each other, as Trm1 becomes mitochondrial if prevented from entering the nucleus.

Indexed as

Active Transport, Cell NucleusAmino Acid Motifsbeta-GalactosidaseCytoplasmFluorescent Antibody Technique, IndirectGreen Fluorescent ProteinsMitochondriaNuclear EnvelopeNuclear Localization SignalsNuclear PorePlasmidsran GTP-Binding ProteinRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinstRNA Methyltransferasesbeta-GalactosidaseGreen Fluorescent ProteinsNuclear Localization Signalsran GTP-Binding ProteinRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsTrm1-11, S cerevisiaetRNA Methyltransferases

Identifiers

PMID19602197
PMCPMC2788508
OpenAlexW2094578746

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.