Evidence map›Paper›PMID 19602153›Full record

ArticleMolecular microbiology2009

Phylogenetic analysis identifies many uncharacterized actin-like proteins (Alps) in bacteria: regulated polymerization, dynamic instability and treadmilling in Alp7A.

Alan I Derman, Eric C Becker, Bao D Truong, Akina Fujioka, Timothy M Tucey, Marcella L Erb, Paula C Patterson, Joe Pogliano

Abstract read
In one paragraph

Article in Molecular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Multiple Layered Control of the Conjugation Process of theFrontiers in molecular biosciences · 2021
    Review
  9. Review
  10. Emerging Functions of Actins and Actin Binding Proteins in Trypanosomatids.Frontiers in cell and developmental biology · 2020
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Overview of the Cytoskeleton from an Evolutionary Perspective.Cold Spring Harbor perspectives in biology · 2018
    Review
  16. Review
  17. Cryo-EM reconstruction of AlfA fromProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. The complex simplicity of the bacterial cytoskeleton.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alan I DermanDivision of Biological Sciences, University of California San Diego, La Jolla, CA 92093-0377, USA.
Eric C Becker
Bao D Truong
Akina Fujioka
Timothy M Tucey
Marcella L Erb
Paula C Patterson
Joe Pogliano

Funding

DNA segregation during Bacillus growth and developmentR01GM073898 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, JOSEPH A · 2006 to 2013
$2.4M
NIGMS NIH HHS R01 GM073898NIGMS NIH HHS R01-GM073898
6 · The paper itself

Abstract

Actin, one of the most abundant proteins in the eukaryotic cell, also has an abundance of relatives in the eukaryotic proteome. To date though, only five families of actins have been characterized in bacteria. We have conducted a phylogenetic search and uncovered more than 35 highly divergent families of actin-like proteins (Alps) in bacteria. Their genes are found primarily on phage genomes, on plasmids and on integrating conjugative elements, and are likely to be involved in a variety of functions. We characterize three Alps and find that all form filaments in the cell. The filaments of Alp7A, a plasmid partitioning protein and one of the most divergent of the Alps, display dynamic instability and also treadmill. Alp7A requires other elements from the plasmid to assemble into dynamic polymers in the cell. Our findings suggest that most if not all of the Alps are indeed actin relatives, and that actin is very well represented in bacteria.

Indexed as

PhylogenyActinsAmino Acid SequenceBacteriaBacterial ProteinsComputational BiologyMolecular Sequence DataMultigene FamilyOperonPlasmidsSequence AlignmentActinsBacterial Proteins

Identifiers

PMID19602153
PMCPMC2814180

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.