Evidence map›Paper›PMID 19597182›Full record

ArticleBlood2009

Cytokine-mediated increases in fetal hemoglobin are associated with globin gene histone modification and transcription factor reprogramming.

Orapan Sripichai, Christine M Kiefer, Natarajan V Bhanu, Toshihiko Tanno, Seung-Jae Noh, Sung-Ho Goh, J Eric Russell, Cheryl L Rognerud, Ching-Nan Ou, Patricia A Oneal and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 57 citations in OpenAlex.

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  14. IGF2BP1 overexpression causes fetal-like hemoglobin expression patterns in cultured human adult erythroblasts.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Orapan SripichaiMolecular Medicine Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Christine M Kiefer
Natarajan V Bhanu
Toshihiko Tanno
Seung-Jae Noh
Sung-Ho Goh
J Eric Russell
Cheryl L Rognerud
Ching-Nan Ou
Patricia A Oneal
Emily R Meier
Nicole M Gantt
Colleen Byrnes
Y Terry Lee
Ann Dean
Jeffery L Miller
Institute of Molecular Medicine · INNational Institute of Diabetes and Digestive and Kidney Diseases · USTexas Children's Hospital · USNational Institutes of Health · USUniversity of Pennsylvania · US

Funding

Epigenetic and Developmental Regulation of Mammalian GenesZIADK075033 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DEAN, ANN · 2009 to 2025
$24.2M
REGULATION AND FUNCTION OF A HUMAN EMBRYONIC GLOBINR01HL061399 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 1999 to 2012
$3.9M
Regulation of Fetal Hemoglobin Production in Humans.ZIADK025101 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI MILLER, JEFFERY · 2009 to 2016
$3.4M
Nucleolin-mediated stabilization of human B-globin mRNAR01HL082754 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 2007 to 2011
$2.0M
Epigenetics of developmental regulation of mammalian genesZ01DK015613 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DEAN, ANN · 2007 to 2008
$712k
Peripheral Blood Collection and Chracterization of Adult Stem Cells.ZIADK025095 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI MILLER, JEFFERY · 2009 to 2011
$529k
Intramural NIH HHSNHLBI NIH HHS R01 HL061399NHLBI NIH HHS R01 HL082754
6 · The paper itself

Abstract

Therapeutic regulation of globin genes is a primary goal of translational research aimed toward hemoglobinopathies. Signal transduction was used to identify chromatin modifications and transcription factor expression patterns that are associated with globin gene regulation. Histone modification and transcriptome profiling were performed using adult primary CD34(+) cells cultured with cytokine combinations that produced low versus high levels of gamma-globin mRNA and fetal hemoglobin (HbF). Embryonic, fetal, and adult globin transcript and protein expression patterns were determined for comparison. Chromatin immunoprecipitation assays revealed RNA polymerase II occupancy and histone tail modifications consistent with transcriptional activation only in the high-HbF culture condition. Transcriptome profiling studies demonstrated reproducible changes in expression of nuclear transcription factors associated with high HbF. Among the 13 genes that demonstrated differential transcript levels, 8 demonstrated nuclear protein expression levels that were significantly changed by cytokine signal transduction. Five of the 8 genes are recognized regulators of erythropoiesis or globin genes (MAFF, ID2, HHEX, SOX6, and EGR1). Thus, cytokine-mediated signal transduction in adult erythroid cells causes significant changes in the pattern of globin gene and protein expression that are associated with distinct histone modifications as well as nuclear reprogramming of erythroid transcription factors.

Indexed as

Protein Processing, Post-TranslationalAdultAntigens, CD34Cells, CulturedCytokinesErythroid CellsFetal HemoglobinGene Expression ProfilingGene Expression RegulationHemoglobinopathiesHistonesHumansRNA Polymerase IISignal TransductionTranscription FactorsTranscription, GeneticAntigens, CD34CytokinesFetal HemoglobinHistonesRNA Polymerase IITranscription Factors

Identifiers

PMID19597182
PMCPMC2745848
OpenAlexW2050506358

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.