ArticleProceedings of the National Academy of Sciences of the United States of America2009
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 283 papers.
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283 citing papers in PubMed.
- An IRAT109 NAM population: Genetic characterization and mapping utility for trait dissection in japonica rice (Oryza sativa L.).The plant genome · 2026Article
- Multi-model genome-wide association studies identify stable QTLs and candidate genes for lodging resistance inFrontiers in plant science · 2026Article
- Natural Variation in the Promoter of OsMOT1;1 Contributes to Differential Molybdenum Accumulation between Indica and Japonica Rice.Rice (New York, N.Y.) · 2025Article
- Genome-wide association study identifies quantitative trait loci associated with resistance to Verticillium dahliae race 3 in tomato.The plant genome · 2025Article
- GWAS and haplotype analysis reveal the intricate interplay of hormones in rice seed germination under hypoxic conditions.3 Biotech · 2025Article
- Multi-Experiment and Multi-Locus Genome-Wide Association Mapping for Grain Arsenic in Rice Population.Plant direct · 2025Article
- Molecular mapping of a novel locus S68 for intrasubspecific hybrid sterility in indica-indica hybrid.Scientific reports · 2025Article
- Integrating crop models, single nucleotide polymorphism, and climatic indices to develop genotype-environment interaction model: A case study on rice flowering time.Plant phenomics (Washington, D.C.) · 2025Article
- Introgression among subgroups is an important driving force for genetic improvement and evolution of the Asian cultivated riceFrontiers in plant science · 2025Review
- Genome-wide analysis of Udai21: Unraveling the genetic basis of superior eating quality in rice.PloS one · 2025Article
- Identification of a novel hybrid sterility locus S67 between temperate japonica subgroup and basmati subgroup in Oryza sativa L.Scientific reports · 2024Article
- Oryza CLIMtools: A genome-environment association resource reveals adaptive roles for heterotrimeric G proteins in the regulation of rice agronomic traits.Plant communications · 2024Article
- A transposon insertion in the promoter of OsUBC12 enhances cold tolerance during japonica rice germination.Nature communications · 2024Article
- New insights into QTNs and potential candidate genes governing rice yield via a multi-model genome-wide association study.BMC plant biology · 2024Article
- Identification and functional validation of a new gene conferring resistance toFrontiers in plant science · 2024Article
- Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes.Biomolecules · 2023Review
- Traces of Introgression from cAus into Tropical Japonica Observed in African Upland Rice Varieties.Rice (New York, N.Y.) · 2023Article
- Genome-wide association study reveals novel genetic loci involved in anaerobic germination tolerance inMolecular breeding : new strategies in plant improvement · 2023Article
- A Strategy for the Acquisition and Analysis of Image-Based Phenome in Rice during the Whole Growth Period.Plant phenomics (Washington, D.C.) · 2023Article
- Exploring the sorghum race level diversity utilizing 272 sorghum accessions genomic resources.Frontiers in plant science · 2023Article
223 more citing papers are in PubMed but not listed here.
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Authors and funding
23 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. Here, we report the distribution of 160,000 nonredundant SNPs. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement. These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene-trait relationships and their use for future rice improvement.
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