Evidence map›Paper›PMID 19596908›Full record

ArticleGenetics2009

Epistatic effects of the protease/chaperone HflB on some damaged forms of the Escherichia coli ammonium channel AmtB.

William B Inwood, Jason A Hall, Kwang-Seo Kim, Lusine Demirkhanyan, David Wemmer, Helen Zgurskaya, Sydney Kustu

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Mechanism for nitrogen isotope fractionation during ammonium assimilation by Escherichia coli K12.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  4. Article
  5. The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

William B InwoodDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA.
Jason A Hall
Kwang-Seo Kim
Lusine Demirkhanyan
David Wemmer
Helen Zgurskaya
Sydney Kustu
University of California, Berkeley · USUniversity of Oklahoma · US

Funding

GENETIC STUDIES OF GLUTAMINE SYNTHETASE IN BACTERIAR37GM038361 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUSTU, SYDNEY GOVONS · 1997 to 2006
$3.1M
GENETIC STUDIES OF GLUTAMINE SYNTHETASE IN BACTERIAR01GM038361 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KUSTU, SYDNEY GOVONS · 1986 to 2010
$1.9M
NIGMS NIH HHS GM38361NIGMS NIH HHS R01 GM038361NIGMS NIH HHS R37 GM038361
6 · The paper itself

Abstract

The Escherichia coli ammonium channel AmtB is a trimer in which each monomer carries a pore for substrate conduction and a cytoplasmic C-terminal extension of approximately 25 residues. Deletion of the entire extension leaves the protein with intermediate activity, but some smaller lesions in this region completely inactivate AmtB, as do some lesions in its cytoplasmic loops. We here provide genetic evidence that inactivation depends on the essential protease HflB, which appears to cause inactivation not as a protease but as a chaperone. Selection for restored function of AmtB is a positive selection for loss of the ATPase/chaperone activity of HflB and reveals that the conditional lethal phenotype for hflB is cold sensitivity. Deletion of only a few residues from the C terminus of damaged AmtB proteins seems to prevent HflB from acting on them. Either yields the intermediate activity of a complete C-terminal deletion. HflB apparently "tacks" damaged AmtB tails to the adjacent monomers. Knowing that HflB has intervened is prerequisite to determining the functional basis for AmtB inactivation.

Indexed as

Epistasis, GeneticAmino Acid SequenceATP-Dependent ProteasesCation Transport ProteinsEscherichia coliEscherichia coli ProteinsModels, MolecularMolecular ChaperonesMolecular Sequence DataMutant ProteinsProtein ConformationSuppression, GeneticAmtB protein, E coliATP-Dependent ProteasesCation Transport ProteinsEscherichia coli ProteinsFtsH protein, E coliMolecular ChaperonesMutant Proteins

Identifiers

PMID19596908
PMCPMC2787424
OpenAlexW2144840174

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.