Evidence map›Paper›PMID 19596900›Full record

ArticleGenetics2009

Transcription independent insulation at TFIIIC-dependent insulators.

Lourdes Valenzuela, Namrita Dhillon, Rohinton T Kamakaka

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Measuring the buffering capacity of gene silencing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Article
  11. Enjoy the Silence: Nearly Half of Human tRNA Genes Are Silent.Bioinformatics and biology insights · 2019
    Article
  12. Review
  13. Review
  14. Targeting Histone Deacetylases in Diseases: Where Are We?Antioxidants & redox signaling · 2015
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lourdes ValenzuelaDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California 95064, USA.
Namrita Dhillon
Rohinton T Kamakaka
University of California, Santa Cruz · US

Funding

Chromatin Domain DynamicsR01GM078068 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KAMAKAKA, ROHINTON T. · 2007 to 2018
$3.7M
NIGMS NIH HHS GM078068NIGMS NIH HHS R01 GM078068
6 · The paper itself

Abstract

Chromatin insulators separate active from repressed chromatin domains. In yeast the RNA pol III transcription machinery bound to tRNA genes function with histone acetylases and chromatin remodelers to restrict the spread of heterochromatin. Our results collectively demonstrate that binding of TFIIIC is necessary for insulation but binding of TFIIIB along with TFIIIC likely improves the probability of complex formation at an insulator. Insulation by this transcription factor occurs in the absence of RNA polymerase III or polymerase II but requires specific histone acetylases and chromatin remodelers. This analysis identifies a minimal set of factors required for insulation.

Indexed as

Chromatin Assembly and DisassemblyChromosome MappingHistone AcetyltransferasesInsulator ElementsOrganisms, Genetically ModifiedProtein MultimerizationRNA, TransferTranscription FactorsTranscription Factors, TFIIITranscription Factor TFIIICTranscription, GeneticYeastsHistone AcetyltransferasesRNA, TransferTranscription FactorsTranscription Factors, TFIIITranscription Factor TFIIIC

Identifiers

PMID19596900
PMCPMC2746139
OpenAlexW2100117514

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.