Evidence map›Paper›PMID 19596381›Full record

ReviewBiochimica et biophysica acta2009

Functionalization of a nanopore: the nuclear pore complex paradigm.

Reiner Peters

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  7. Disordered proteinaceous machines.Chemical reviews · 2014
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Single molecule studies of nucleocytoplasmic transport.Biochimica et biophysica acta · 2011
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Reiner PetersThe Rockefeller University, Laboratory for mass spectrometry and gaseous ion chemistry, 1230 York Avenue, New York, NY 10065, USA. rpeters@rockefeller.edu
Rockefeller University · US

Funding

Virtual Gating Machines for Protein PurificationR01GM071329 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2004 to 2013
$4.6M
NIGMS NIH HHS 1 R01 GM071329-01NIGMS NIH HHS R01 GM071329
6 · The paper itself

Abstract

Biological cells maintain a myriad of nanopores which, although relying on the same basic small-hole principle, serve a large variety of functions. Here we consider how the nuclear pore complex (NPC), a large nanopore mediating the traffic between genetic material and protein synthesizing apparatus, is functionalized to carry out a set of transport functions. A major parameter of NPC functionalization is a lining of it external and internal surfaces with so-called phenylalanine glycine (FG) proteins. FG proteins integrate a multitude of transport factor binding sites into intrinsically disordered domains. This surprising finding has given rise to a number of transport models assigning direct gating functions to FG proteins. However, recent data suggest that the properties of FG proteins cannot be properly assessed by considering only the purified, transport-factor-stripped NPC. At physiological conditions transport factors may shape FG proteins in a way allotting an essential role to surface diffusion, reconciling tight binding with efficient transport. Thus, NPC studies are revealing both general traits and novel aspects of nanopore functionalization. In addition, they inspire artificial molecule sorters for proteomic and pharmaceutical applications.

Indexed as

Active Transport, Cell NucleusAmino Acid MotifsAnimalsBinding SitesHumansModels, BiologicalNanostructuresNuclear PoreNuclear Pore Complex ProteinsProtein ConformationProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearRepetitive Sequences, Amino AcidNuclear Pore Complex ProteinsReceptors, Cytoplasmic and Nuclear

Identifiers

PMID19596381
PMCPMC2756448
OpenAlexW2102902520

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.