Evidence map›Paper›PMID 19596083›Full record

ArticleGene expression patterns : GEP2009

Differential expression of Rfx1-4 during mouse spermatogenesis.

W Stephen Kistler, Gary C Horvath, Anindya Dasgupta, Malathi K Kistler

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Rfx2 is required for spermatogenesis in the mouse.Genesis (New York, N.Y. : 2000) · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

W Stephen KistlerDepartment of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, USA. wskistler@sc.edu
Gary C Horvath
Anindya Dasgupta
Malathi K Kistler
University of South Carolina · US

Funding

ROLE OF SPECIFIC PROTEINS IN SPERMATOGENESISR01HD010793 · NICHD · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI KISTLER, W STEPHEN · 1985 to 2007
$1.8M
NICHD NIH HHS R01 HD010793NICHD NIH HHS R01HD10793
6 · The paper itself

Abstract

The regulatory factor X (RFX) family of transcription factors has been recently implicated in gene regulation during spermatogenesis. However, the relative expression of individual members during this developmental process is not completely characterized, particularly in the case of Rfx4, which has multiple transcript variants in the testis. We used reverse transcriptase-dependent real-time PCR, 5'-RACE cloning, and Western blotting to compare transcripts and protein levels for this family in cell populations from the three major phases of spermatogenesis (mitotic, meiotic, and haploid). Transcripts for Rfx1-4 were present at trace to low levels in spermatogonia prepared from 8-day-old mice. Transcripts for both Rfx2 and Rfx4 were elevated in mid-late pachytene spermatocytes; however, the dominant Rfx4 transcript present begins at a downstream exon and lacks the DNA binding domain. Transcripts for all four genes were elevated in early haploid cells (round spermatids). In these cells Rfx4 transcripts originate primarily from a newly described promoter with intron 1 but are expected to be translationally compromised due to a poorly situated start codon. Western blotting confirmed that RFX2 is greatly elevated beginning in meiosis and also confirmed that full-length RFX4 protein is not prevalent in mouse testis at any stage. These results imply that RFX2 is the most likely X box binding factor to influence novel gene expression during meiosis, that RFX1-3 may all play roles in haploid cells but that RFX4 is much less prevalent than implied by its high transcript levels.

Indexed as

AnimalsBase SequenceDNA-Binding ProteinsDNA, ComplementaryGene Expression RegulationGerm CellsMaleMiceMice, Inbred StrainsMolecular Sequence DataPromoter Regions, GeneticRegulatory Factor X1Regulatory Factor X Transcription FactorsReverse Transcriptase Polymerase Chain ReactionSpermatocytesSpermatogenesisDNA-Binding ProteinsDNA, ComplementaryRegulatory Factor X1Regulatory Factor X Transcription FactorsRfx1 protein, mouseRfx2 protein, mouseRfx4 protein, mouseTranscription Factors

Identifiers

PMID19596083
PMCPMC2761754
OpenAlexW2028024488

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.