Evidence map›Paper›PMID 19595734›Full record

ArticleBiochimie2009

Identification of the putative tumor suppressor Nit2 as omega-amidase, an enzyme metabolically linked to glutamine and asparagine transamination.

Boris F Krasnikov, Chin-Hsiang Chien, Regina Nostramo, John T Pinto, Edward Nieves, Myrasol Callaway, Jin Sun, Kay Huebner, Arthur J L Cooper

Abstract read
In one paragraph

Article in Biochimie, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Preparative Biocatalytic Synthesis of α-Ketoglutaramate.International journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. A Genetic Screen Using theG3 (Bethesda, Md.) · 2019
    Article
  13. Article
  14. Nit1 is a metabolite repair enzyme that hydrolyzes deaminated glutathione.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Boris F KrasnikovDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY 10595, USA. boris_krasnikov@nymc.edu
Chin-Hsiang Chien
Regina Nostramo
John T Pinto
Edward Nieves
Myrasol Callaway
Jin Sun
Kay Huebner
Arthur J L Cooper
New York Medical College · USAlbert Einstein College of Medicine · USThe Ohio State University · USNational Yang Ming Chiao Tung University · TW

Funding

MECHANISM OF GLUTATHIONE CONJUGATE DEPENDENT TOXICITYR01ES008421 · NIEHS · WINIFRED MASTERSON BURKE MED RES INST · PI COOPER, ARTHUR JOSEPH · 1997 to 2007
$2.0M
Fhit modulation of cell cycle progression and DNA damage responseR01CA132453 · NCI · OHIO STATE UNIVERSITY · PI HUEBNER, KAY · 2007 to 2010
$1.3M
Targets for selenium in prostate cancer preventionR01CA111842 · NCI · WINIFRED MASTERSON BURKE MED RES INST · PI PINTO, JOHN T · 2006 to 2009
$1.2M
MASS SPECTROMETER SYSTEM: OBESITYS10RR019352 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2004 to 2004
$379k
NCI NIH HHS CA111842NCI NIH HHS R01 CA111842NCI NIH HHS R01 CA132453NCRR NIH HHS S10 RR019352NIEHS NIH HHS R01 ES008421NIEHS NIH HHS R01ES008421
6 · The paper itself

Abstract

The present report identifies the enzymatic substrates of a member of the mammalian nitrilase-like (Nit) family. Nit2, which is widely distributed in nature, has been suggested to be a tumor suppressor protein. The protein was assumed to be an amidase based on sequence homology to other amidases and on the presence of a putative amidase-like active site. This assumption was recently confirmed by the publication of the crystal structure of mouse Nit2. However, the in vivo substrates were not previously identified. Here we report that rat liver Nit2 is omega-amidodicarboxylate amidohydrolase (E.C. 3.5.1.3; abbreviated omega-amidase), a ubiquitously expressed enzyme that catalyzes a variety of amidase, transamidase, esterase and transesterification reactions. The in vivo amidase substrates are alpha-ketoglutaramate and alpha-ketosuccinamate, generated by transamination of glutamine and asparagine, respectively. Glutamine transaminases serve to salvage a number of alpha-keto acids generated through non-specific transamination reactions (particularly those of the essential amino acids). Asparagine transamination appears to be useful in mitochondrial metabolism and in photorespiration. Glutamine transaminases play a particularly important role in transaminating alpha-keto-gamma-methiolbutyrate, a key component of the methionine salvage pathway. Some evidence suggests that excess alpha-ketoglutaramate may be neurotoxic. Moreover, alpha-ketosuccinamate is unstable and is readily converted to a number of hetero-aromatic compounds that may be toxic. Thus, an important role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively. Despite its importance in nitrogen and sulfur metabolism, the biochemical significance of omega-amidase has been largely overlooked. Our report may provide clues regarding the nature of the biological amidase substrate(s) of Nit1 (another member of the Nit family), which is a well-established tumor suppressor protein), and emphasizes a) the crucial role of Nit2 in nitrogen and sulfur metabolism, and b) the possible link of Nit2 to cancer biology.

Indexed as

AmidohydrolasesAminohydrolasesAnimalsAsparagineElectrophoresis, Polyacrylamide GelGlutamineHumansKetoglutaric AcidsKineticsLiverMiceMice, KnockoutProtein SubunitsRatsSpectrometry, Mass, Matrix-Assisted Laser Desorption-Ionizationalpha-ketoglutaramateAmidohydrolasesAminohydrolasesAsparagineGlutamineKetoglutaric Acidsomega-amidaseProtein Subunits

Identifiers

PMID19595734
PMCPMC2745200
OpenAlexW1969256905

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.