Evidence map›Paper›PMID 19595719›Full record

ArticleMolecular cell2009

Docking of a specialized PIP Box onto chromatin-bound PCNA creates a degron for the ubiquitin ligase CRL4Cdt2.

Courtney G Havens, Johannes C Walter

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 179 citations in OpenAlex.

  1. Article
  2. Article
  3. Degrons: defining the rules of protein degradation.Nature reviews. Molecular cell biology · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. A FRET-Based Assay for the Identification of PCNA Inhibitors.International journal of molecular sciences · 2023
    Article
  14. Article
  15. The cohesin modifier ESCO2 is stable during DNA replication.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
  16. Article
  17. Article
  18. Canonical binding ofFrontiers in molecular biosciences · 2023
    Article
  19. Article
  20. Unorthodox PCNA Binding by Chromatin Assembly Factor 1.International journal of molecular sciences · 2022
    Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Courtney G HavensDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Johannes C Walter
Harvard University · US

Funding

Properties of the eukaryotic replicative DNA helicaseR01GM062267 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALTER, JOHANNES · 2001 to 2014
$4.1M
The mechanism of vertebrate DNA replication terminationR01GM080676 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALTER, JOHANNES · 2007 to 2019
$3.7M
Mechanism of PCNA-Dependent Cdt1 Destruction in S phaseF32GM082014 · NIGMS · HARVARD MEDICAL SCHOOL · PI HAVENS, COURTNEY G · 2007 to 2009
$148k
NIGMS NIH HHS F32 GM082014NIGMS NIH HHS F32-GM082014NIGMS NIH HHS R01 GM062267NIGMS NIH HHS R01 GM080676NIGMS NIH HHS R01-GM080676
6 · The paper itself

Abstract

Substrates of the E3 ubiquitin ligase CRL4(Cdt2), including Cdt1 and p21, contain a PCNA-binding motif called a PIP box. Upon binding of the PIP box to PCNA on chromatin, CRL4(Cdt2) is recruited and the substrate is ubiquitylated. Importantly, a PIP box cannot be sufficient for destruction, as most PIP box proteins are stable. Using Xenopus egg extracts, we identify two sequence elements in CRL4(Cdt2) substrates that promote their proteolysis: a specialized PIP box that confers exceptionally efficient PCNA binding and a basic amino acid 4 residues downstream of the PIP box, which recruits CRL4(Cdt2) to the substrate-PCNA complex. We also identify two mechanisms that couple CRL4(Cdt2)-dependent proteolysis to the chromatin-bound form of PCNA, ensuring that this proteolysis pathway is active only in S phase or after DNA damage. Thus, CRL4(Cdt2) recognizes an unusual degron, which is assembled specifically on chromatin via the binding of a specialized PIP box to PCNA.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCell Cycle ProteinsChromatinCyclin-Dependent Kinase Inhibitor p21DNA-Binding ProteinsFlap EndonucleasesHumansImmunoprecipitationModels, MolecularMolecular Sequence DataMultiprotein ComplexesMutationProliferating Cell Nuclear AntigenProtein BindingCdt1 protein, XenopusCell Cycle ProteinsChromatinCyclin-Dependent Kinase Inhibitor p21DNA-Binding ProteinsFlap EndonucleasesMultiprotein ComplexesProliferating Cell Nuclear AntigenUbiquitin-Protein LigasesXenopus Proteins

Identifiers

PMID19595719
PMCPMC2744448
OpenAlexW1998631635

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.