Evidence map›Paper›PMID 19595718›Full record

ArticleMolecular cell2009

Large-scale expansions of Friedreich's ataxia GAA repeats in yeast.

Alexander A Shishkin, Irina Voineagu, Robert Matera, Nicole Cherng, Brook T Chernet, Maria M Krasilnikova, Vidhya Narayanan, Kirill S Lobachev, Sergei M Mirkin

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 137 citations in OpenAlex.

  1. Article
  2. Review
  3. Emerging drivers of DNA repeat expansions.Biochemical Society transactions · 2025
    Review
  4. Article
  5. Recurrent DNA nicks drive massive expansions of (GAA)Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. The TIMELESS effort for timely DNA replication and protection.Cellular and molecular life sciences : CMLS · 2023
    Review
  13. Article
  14. Review
  15. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Interruptions of theInternational journal of molecular sciences · 2021
    Article
  20. Review

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Alexander A ShishkinDepartment of Biology, Tufts University, Medford, MA 02155, USA.
Irina Voineagu
Robert Matera
Nicole Cherng
Brook T Chernet
Maria M Krasilnikova
Vidhya Narayanan
Kirill S Lobachev
Sergei M Mirkin
Tufts University · USGeorgia Institute of Technology · USPennsylvania State University · US

Funding

REPLICATION OF SIMPLE DNA REPEATSR01GM060987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MIRKIN, SERGEI · 2001 to 2017
$4.9M
NIGMS NIH HHS GM082590NIGMS NIH HHS GM60987NIGMS NIH HHS R01 GM060987
6 · The paper itself

Abstract

Large-scale expansions of DNA repeats are implicated in numerous hereditary disorders in humans. We describe a yeast experimental system to analyze large-scale expansions of triplet GAA repeats responsible for the human disease Friedreich's ataxia. When GAA repeats were placed into an intron of the chimeric URA3 gene, their expansions caused gene inactivation, which was detected on the selective media. We found that the rates of expansions of GAA repeats increased exponentially with their lengths. These rates were only mildly dependent on the repeat's orientation within the replicon, whereas the repeat-mediated replication fork stalling was exquisitely orientation dependent. Expansion rates were significantly elevated upon inactivation of the replication fork stabilizers, Tof1 and Csm3, but decreased in the knockouts of postreplication DNA repair proteins, Rad6 and Rad5, and the DNA helicase Sgs1. We propose a model for large-scale repeat expansions based on template switching during replication fork progression through repetitive DNA.

Indexed as

DNA ReplicationFrataxinFriedreich AtaxiaGene Expression Regulation, FungalHumansIntronsIron-Binding ProteinsPlasmidsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTrinucleotide Repeat ExpansionTrinucleotide RepeatsYeastsFrataxinIron-Binding ProteinsRNA, Messenger

Identifiers

PMID19595718
PMCPMC2722067
OpenAlexW1965493201

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.