Evidence map›Paper›PMID 19593362›Full record

ArticlePLoS computational biology2009

Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation.

Daniel Geberth, Marc-Thorsten Hütt

Abstract read
In one paragraph

Article in PLoS computational biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Fold-change detection and scale invariance of cell-cell signaling in social amoeba.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. Review
  5. Perspective: network-guided pattern formation of neural dynamics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  6. Visualizing time-related data in biology, a review.Briefings in bioinformatics · 2014
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Daniel GeberthComputational Systems Biology, School of Engineering and Science, Jacobs University Bremen, Bremen, Germany. d.geberth@jacobs-university.de
Marc-Thorsten Hütt

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The slime mold Dictyostelium discoideum is one of the model systems of biological pattern formation. One of the most successful answers to the challenge of establishing a spiral wave pattern in a colony of homogeneously distributed D. discoideum cells has been the suggestion of a developmental path the cells follow (Lauzeral and coworkers). This is a well-defined change in properties each cell undergoes on a longer time scale than the typical dynamics of the cell. Here we show that this concept leads to an inhomogeneous and systematic spatial distribution of spiral waves, which can be predicted from the distribution of cells on the developmental path. We propose specific experiments for checking whether such systematics are also found in data and thus, indirectly, provide evidence of a developmental path.

Indexed as

Models, BiologicalAlgorithmsAnimalsComputational BiologyCyclic AMPDictyosteliumModels, StatisticalPhosphoric Diester HydrolasesCyclic AMPPhosphoric Diester Hydrolases

Identifiers

PMID19593362
PMCPMC2699541

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.