Evidence map›Paper›PMID 19592498›Full record

ArticleThe Journal of biological chemistry2009

Pro-interleukin (IL)-1beta shares a core region of stability as compared with mature IL-1beta while maintaining a distinctly different configurational landscape: a comparative hydrogen/deuterium exchange mass spectrometry study.

Kendra L Hailey, Sheng Li, Mette D Andersen, Melinda Roy, Virgil L Woods, Patricia A Jennings

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
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  5. Redox-dependent gating of VDAC by mitoNEET.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  12. Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kendra L HaileyDepartment of Chemistry and Biochemistry, University of California, La Jolla, California 92093, USA.
Sheng Li
Mette D Andersen
Melinda Roy
Virgil L Woods
Patricia A Jennings
University of California, San Diego · US

Funding

Role of complement in kidney disorders: from hemodialysis to transportationP01AI068730 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI LAMBRIS, JOHN D · 2007 to 2018
$16.0M
ACTION OF LIPOLYTIC ENZYMESR01GM020501 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 1985 to 2020
$7.3M
Epac/cAMP-GEF, A Novel Intracellular cAMP ReceptorR01GM066170 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CHENG, XIAODONG · 2003 to 2017
$4.6M
STRUCTURAL ANALYSIS OF CHROMATICALLY ACTIVE PROTEINSR01GM037684 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GETZOFF, ELIZABETH D · 1987 to 2009
$3.1M
STRUCTURE DRIVEN ANALYSIS OF EBOLA VIRUS RECEPTOR BINDING SITER01AI081982 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SAPHIRE, ERICA OLLMANN · 2010 to 2014
$2.8M
Investigation of the Functional/Folding Landscapes of the Il-1 FamilyR01GM054038 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JENNINGS, PATRICIA A · 2002 to 2010
$2.4M
Thermodynamic and structural studies on the formation of the C3 convertaseR01AI072106 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI LAMBRIS, JOHN D · 2007 to 2011
$2.0M
Enhanced Crystallography of Cancer-Implicated ProteinsR33CA099835 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2004 to 2006
$1.8M
Hydrogen Deuterium Exchange Mapping of Chemokine Receptor Complex InterfacesR21AI076961 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M, WOODS, VIRGIL L · 2008 to 2009
$425k
DXMS-Facilitated Membrane Protein Construct Design/CancerR21CA118595 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WOODS, VIRGIL L · 2006 to 2007
$420k
Enhanced Crystallography of Cancer-Implicated ProteinsR21CA099835 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI WOODS, VIRGIL L · 2003 to 2003
$142k
FOLDING MECHANISM OF A BETA PROTEINR29GM054038 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI JENNINGS, PATRICIA A · 1996 to 2000
$106k
NCI NIH HHS CA099835NCI NIH HHS CA118595NCI NIH HHS R21 CA099835NCI NIH HHS R21 CA118595NCI NIH HHS R33 CA099835NIAID NIH HHS AI068730NIAID NIH HHS AI072106NIAID NIH HHS AI076961NIAID NIH HHS AI081982NIAID NIH HHS P01 AI068730NIAID NIH HHS R01 AI072106NIAID NIH HHS R01 AI081982NIAID NIH HHS R21 AI076961NIGMS NIH HHS F32 GM020501NIGMS NIH HHS GM020501NIGMS NIH HHS GM037684NIGMS NIH HHS GM066170NIGMS NIH HHS GM54038NIGMS NIH HHS R01 GM020501NIGMS NIH HHS R01 GM037684NIGMS NIH HHS R01 GM054038NIGMS NIH HHS R01 GM066170NIGMS NIH HHS R29 GM054038
6 · The paper itself

Abstract

Interleukin-1beta (IL-1beta) is a master cytokine involved in initiating the innate immune response in vertebrates (Dinarello, C. A. (1994) FASEB J. 8, 1314-1325). It is first synthesized as an inactive 269-residue precursor (pro-interleukin-1beta or pro-IL-1beta). Pro-IL-1beta requires processing by caspase-1 to generate the active, mature 153-residue cytokine. In this study, we combined hydrogen/deuterium exchange mass spectrometry, circular dichroism spectroscopy, and enzymatic digestion comparative studies to investigate the configurational landscape of pro-IL-1beta and the role the N terminus plays in modulating the landscape. We find that the N terminus keeps pro-IL-1beta in a protease-labile state while maintaining a core region of stability in the C-terminal region, the eventual mature protein. In mature IL-1beta, this highly protected region maps back to the area protected earliest in the NMR studies characterizing an on-route kinetic refolding intermediate. This protected region also encompasses two important functional loops that participate in the IL-1beta/receptor binding interface required for biological activity. We propose that the purpose of the N-terminal precursor region in pro-IL-1beta is to suppress the function of the eventual mature region while keeping a structurally and also functionally important core region primed for the final folding into the native, active state of the mature protein. The presence of the self-inhibiting precursor region provides yet another layer of regulation in the life cycle of this important cytokine.

Indexed as

Deuterium Exchange MeasurementHumansInterleukin-1Interleukin-1betaProtein PrecursorsProtein Structure, SecondaryProtein Structure, TertiaryStructure-Activity RelationshipInterleukin-1Interleukin-1betainterleukin 1 precursorProtein Precursors

Identifiers

PMID19592498
PMCPMC2758013
OpenAlexW2066665372

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.