Evidence map›Paper›PMID 19589777›Full record

ArticleThe Journal of biological chemistry2009

A conserved Na(+) binding site of the sodium-coupled neutral amino acid transporter 2 (SNAT2).

Zhou Zhang, Thomas Albers, Heather L Fiumera, Armanda Gameiro, Christof Grewer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Regulation of Amino Acid Transport in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2019
    Review
  9. Article
  10. Article
  11. Na+ coordination at the Na2 site of the Na+/I- symporter.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Structural perspectives on secondary active transporters.Trends in pharmacological sciences · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Zhou ZhangCollege of Life and Environment Sciences, Shanghai Normal University, Shanghai 200234, China.
Thomas Albers
Heather L Fiumera
Armanda Gameiro
Christof Grewer
Binghamton University · USShanghai Normal University · CN

Funding

Molecular Basis of Glutamate TransportR01NS049335 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GREWER, CHRISTOF THEODOR · 2004 to 2012
$2.0M
Molecular Basis of Glutamate TransportR56NS049335 · NINDS · STATE UNIVERSITY OF NY,BINGHAMTON · PI GREWER, CHRISTOF THEODOR · 2008 to 2008
$299k
NINDS NIH HHS 7R01NS049335-05NINDS NIH HHS R01 NS049335NINDS NIH HHS R56 NS049335
6 · The paper itself

Abstract

The SLC38 family of solute transporters mediates the coupled transport of amino acids and Na(+) into or out of cells. The structural basis for this coupled transport process is not known. Here, a profile-based sequence analysis approach was used, predicting a distant relationship with the SLC5/6 transporter families. Homology models using the LeuT(Aa) and Mhp1 transporters of known structure as templates were established, predicting the location of a conserved Na(+) binding site in the center of membrane helices 1 and 8. This homology model was tested experimentally in the SLC38 member SNAT2 by analyzing the effect of a mutation to Thr-384, which is predicted to be part of this Na(+) binding site. The results show that the T384A mutation not only inhibits the anion leak current, which requires Na(+) binding to SNAT2, but also dramatically lowers the Na(+) affinity of the transporter. This result is consistent with a previous analysis of the N82A mutant transporter, which has a similar effect on anion leak current and Na(+) binding and which is also expected to form part of the Na(+) binding site. In contrast, random mutations to other sites in the transporter had little or no effect on Na(+) affinity. Our results are consistent with a cation binding site formed by transmembrane helices 1 and 8 that is conserved among the SLC38 transporters as well as among many other bacterial and plant transporter families of unknown structure, which are homologous to SLC38.

Indexed as

Amino Acid SequenceAmino Acid Transport System ABinding SitesBiological TransportBiotinylationCationsCell MembraneElectrophysiologyHumansKineticsModels, BiologicalMolecular Sequence DataMutationSequence Homology, Amino AcidSodiumAmino Acid Transport System ACationsSLC38A2 protein, humanSodium

Identifiers

PMID19589777
PMCPMC2757233
OpenAlexW1985330323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.