Evidence map›Paper›PMID 19588467›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2010

Association of reading disabilities with regions marked by acetylated H3 histones in KIAA0319.

Jillian M Couto, Izzy Livne-Bar, Katherine Huang, Zhaodong Xu, Tasha Cate-Carter, Yu Feng, Karen Wigg, Tom Humphries, Rosemary Tannock, Elizabeth N Kerr and 3 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 4 pooled it
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 4 syntheses or guidelines pooled it, 53 citations in OpenAlex.

  1. Association betweenJournal of genetics · 2019
    Pooled it
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  4. A family-based association analysis and meta-analysis of the reading disabilities candidate gene DYX1C1.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2013
    Pooled it
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  18. DCDC2 polymorphism is associated with left temporoparietal gray and white matter structures during development.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Jillian M CoutoGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Izzy Livne-BarGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Katherine HuangGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Zhaodong XuGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Tasha Cate-CarterProgram in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Yu FengGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Karen WiggGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Tom HumphriesProgram in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Rosemary TannockProgram in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Elizabeth N KerrProgram in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Maureen W LovettProgram in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Rod BremnerGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Cathy L BarrGenetics and Development Division, Toronto Western Research Institute, Toronto Western Hospital, University Health Network, Toronto, Ontario, Canada.
Hospital for Sick Children · CAToronto Western Hospital · CAUniversity Health Network · CA

Funding

CIHR 36358-1CIHR 36358-2CIHR MOP-36358
6 · The paper itself

Abstract

Reading disabilities (RDs) have been associated with chromosome 6p with recent studies pointing to two genes, DCDC2 and KIAA0319. In this study, markers across the 6p region were tested for association with RD. Our strongest findings were for association with markers in KIAA0319, although with the opposite alleles compared with a previous study. We also found association with markers in VMP, but not with DCDC2. Current evidence indicates that differential regulation of KIAA0319 and DCDC2 contributes to RD, thus we used chromatin immunoprecipitation coupled with genomic tiling arrays (ChIP-chip) to map acetylated histones, a molecular marker for regulatory elements, across a 500 kb genomic region covering the RD locus on 6p. This approach identified several regions marked by acetylated histones that mapped near associated markers, including intron 7 of DCDC2 and the 5' region of KIAA0319. The latter is located within the 70 kb region previously associated with differential expression of KIAA0319. Interestingly, five markers associated with RD in independent studies were also located within the 2.7 kb acetylated region, and six additional associated markers, including the most significant one in this study, were located within a 22 kb haplotype block that encompassed this region. Our data indicates that this putative regulatory region is a likely site of genetic variation contributing to RD in our sample, further narrowing the candidate region.

Indexed as

3' Untranslated RegionsChromosome MappingChromosomes, Human, Pair 6DyslexiaFamily HealthGenetic MarkersGenetic VariationHaplotypesHistonesHumansImmunoprecipitationLinkage DisequilibriumNerve Tissue ProteinsPolymorphism, Single NucleotidePromoter Regions, Genetic3' Untranslated RegionsGenetic MarkersHistonesKIAA0319 protein, humanNerve Tissue Proteins

Identifiers

PMID19588467
PMCPMC5381965
OpenAlexW2168555539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.