ArticleGenetica2009
Microsatellite marker-mediated analysis of the EMBRAPA Rice Core Collection genetic diversity.
Article in Genetica, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed.
- Development of user-selectable diverse sets of cultivated and wild soybean germplasm for genetic and breeding applications.The plant genome · 2026Article
- Genetic Diversity and Population Structure of Sorghum [Frontiers in plant science · 2021Article
- Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping.BMC genetics · 2020Article
- Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India.BMC genetics · 2016Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Article
- QTL Detection and Elite Alleles Mining for Stigma Traits in Oryza sativa by Association Mapping.Frontiers in plant science · 2016Article
- SSR characterization of Oryza glumaepatula populations from the Brazilian Amazon and Cerrado biomes.Genetica · 2015Article
- Population genetic structure of Oryza sativa in East and Southeast Asia and the discovery of elite alleles for grain traits.Scientific reports · 2015Article
- Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India.PloS one · 2015Article
- Development of a core collection for ramie by heuristic search based on SSR markers.Biotechnology, biotechnological equipment · 2014Article
- Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm.Heredity · 2014Article
- Global wild annual Lens collection: a potential resource for lentil genetic base broadening and yield enhancement.PloS one · 2014Article
- Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing.PloS one · 2013Article
- Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection.BMC genetics · 2012Article
- Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.).PloS one · 2012Article
- Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics.BMC systems biology · 2011Article
- Article
- Development and application of a whole-genome simple sequence repeat panel for high-throughput genotyping in soybean.DNA research : an international journal for rapid publication of reports on genes and genomes · 2011Article
- Genotypic and phenotypic characterization of genetic differentiation and diversity in the USDA rice mini-core collection.Genetica · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The objectives of this study were to determine the genetic structure of 242 accessions from the EMBRAPA Rice Core Collection (ERiCC), to create a mini-core collection and to develop a multiplex panel of fluorescent labeled simple sequence repeats (SSRs). Eighty-six SSRs were used to identify 1,066 alleles, with an average number of 12.4 alleles/locus and average polymorphism information content (PIC)/locus of 0.75. A model-based clustering method recognized the structure of the accessions on two levels, according to their cultivation system and origin. The most divergent subgroup identified was the worldwide lowland accessions, with the highest values for gene diversity (0.75), average Rogers distance modified by Wright (0.80), average number of alleles/locus (11.7) and private alleles (132). A mini-core was assembled with the most divergent 24 lowland and upland accessions. This mini-core displayed an average distance of 0.86, an average number of alleles/locus of 8.4 and an average PIC/locus of 0.8. From the 86 SSRs, 24 were selected to compose six multiplex panels in order to optimize the process of rice genotyping. This set of markers distinguished all 242 accessions, and showed an average PIC of 0.80 and an average number of alleles/locus of 15.4, higher than the entire set of 86 SSRs. Since the heterogeneity found in lines and cultivars of ERiCC was higher than expected, it is necessary to analyze pooled DNA samples to get a better estimate of genetic variability. The SSR characterization of ERiCC clearly indicates that there is high genetic variability in rice accessions stored in genebanks worldwide which can be promptly explored by rice pre-breeding programs.
Indexed as
Identifiers
19588255What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.