Evidence map›Paper›PMID 19587764›Full record

ArticleNature2009

Mechanisms promoting translocations in editing and switching peripheral B cells.

Jing H Wang, Monica Gostissa, Catherine T Yan, Peter Goff, Thomas Hickernell, Erica Hansen, Simone Difilippantonio, Duane R Wesemann, Ali A Zarrin, Klaus Rajewsky and 2 more

Abstract read
In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 125 citations in OpenAlex.

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  19. Imbalanced PTEN and PI3K Signaling Impairs Class Switch Recombination.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Article
  20. Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Jing H WangHoward Hughes Medical Institute, USA.
Monica Gostissa
Catherine T Yan
Peter Goff
Thomas Hickernell
Erica Hansen
Simone Difilippantonio
Duane R Wesemann
Ali A Zarrin
Klaus Rajewsky
Andre Nussenzweig
Frederick W Alt
Howard Hughes Medical Institute · USChildren's Hospital · TNHarvard University · USNational Institutes of Health · US

Funding

The Role of BCL-6 in Berminal Center FormationP01CA092625 · NCI · DANA-FARBER CANCER INSTITUTE · PI SHIPP, MARGARET A · 2001 to 2011
$32.9M
Mechanisms that Regulate Antibody Class Switch Recombination and Somatic HypermutationR37AI077595 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI Frederick W. Alt · 2019 to 2026
$4.6M
Molecular Mechanisms of Class Switch RecombinationR01AI077595 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI ALT, FREDERICK W. · 2009 to 2018
$4.3M
Pathobiology of Cancer at the Host and Population LevelT32CA009382 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI YUAN, ZHI-MIN · 1985 to 2012
$2.9M
Howard Hughes Medical InstituteIntramural NIH HHSNCI NIH HHS 5P01CA92625NCI NIH HHS P01 CA092625NCI NIH HHS T32 CA009382NIAID NIH HHS R01 AI077595NIAID NIH HHS R37 AI077595
6 · The paper itself

Abstract

Variable, diversity and joining gene segment (V(D)J) recombination assembles immunoglobulin heavy or light chain (IgH or IgL) variable region exons in developing bone marrow B cells, whereas class switch recombination (CSR) exchanges IgH constant region exons in peripheral B cells. Both processes use directed DNA double-strand breaks (DSBs) repaired by non-homologous end-joining (NHEJ). Errors in either V(D)J recombination or CSR can initiate chromosomal translocations, including oncogenic IgH locus (Igh) to c-myc (also known as Myc) translocations of peripheral B cell lymphomas. Collaboration between these processes has also been proposed to initiate translocations. However, the occurrence of V(D)J recombination in peripheral B cells is controversial. Here we show that activated NHEJ-deficient splenic B cells accumulate V(D)J-recombination-associated breaks at the lambda IgL locus (Igl), as well as CSR-associated Igh breaks, often in the same cell. Moreover, Igl and Igh breaks are frequently joined to form translocations, a phenomenon associated with specific Igh-Igl co-localization. Igh and c-myc also co-localize in these cells; correspondingly, the introduction of frequent c-myc DSBs robustly promotes Igh-c-myc translocations. Our studies show peripheral B cells that attempt secondary V(D)J recombination, and determine a role for mechanistic factors in promoting recurrent translocations in tumours.

Indexed as

AICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesCytidine DeaminaseDNA-Binding ProteinsDNA Breaks, Double-StrandedFemaleGene Rearrangement, B-LymphocyteGenes, ImmunoglobulinGenes, mycHomeodomain ProteinsImmunoglobulin Class SwitchingImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsIntegrasesAICDA (Activation-Induced Cytidine Deaminase)Cre recombinaseCytidine DeaminaseDNA-Binding ProteinsHomeodomain ProteinsImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin lambda-ChainsIntegrasesRAG-1 proteinRag2 protein, mouseReceptors, Complement 3dXRCC4 protein, mouse

Identifiers

PMID19587764
PMCPMC2907259
OpenAlexW1990909659

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.