Evidence map›Paper›PMID 19586676›Full record

ArticleJournal of hepatology2009

Multiple variants in toll-like receptor 4 gene modulate risk of liver fibrosis in Caucasians with chronic hepatitis C infection.

Yonghong Li, Monica Chang, Olivia Abar, Veronica Garcia, Charles Rowland, Joseph Catanese, David Ross, Samuel Broder, Mitchell Shiffman, Ramsey Cheung and 3 more

Abstract read
In one paragraph

Article in Journal of hepatology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Toll-Like Receptor 4 Signaling in the Trabecular Meshwork.Frontiers in cell and developmental biology · 2022
    Review
  6. Fibrosis and hepatic regeneration mechanism.Translational gastroenterology and hepatology · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Starring role of toll-like receptor-4 activation in the gut-liver axis.World journal of gastrointestinal pathophysiology · 2015
    Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Current and future therapies for hepatitis C virus infection.The New England journal of medicine · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Yonghong LiCelera Corporation, 1401 Harbor Bay Parkway, Alameda, CA 94502, USA. yonghong.li@celera.com
Monica Chang
Olivia Abar
Veronica Garcia
Charles Rowland
Joseph Catanese
David Ross
Samuel Broder
Mitchell Shiffman
Ramsey Cheung
Teresa Wright
Scott L Friedman
John Sninsky
Icahn School of Medicine at Mount Sinai · USKyocera (United States) · USStanford University · USUniversity of California, San Francisco · USVirginia Commonwealth University · US

Funding

The Role of KLF6 in Hepatic FibrosisR01DK056621 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI FRIEDMAN, SCOTT L. · 2000 to 2019
$6.2M
NIDDK NIH HHS R01 DK056621
6 · The paper itself

Abstract

BACKGROUND/

aimsSeven genomic loci, implicated by single nucleotide polymorphisms (SNPs), have recently been associated with progression to advanced fibrosis (fibrosis risk) in patients with chronic hepatitis C virus. Other variants in these loci have not been examined but may be associated with fibrosis risk independently of or due to linkage disequilibrium with the original polymorphisms.

methodsWe carried out dense genotyping and association testing of additional SNPs in each of the 7 regions in Caucasian case control samples.

resultsWe identified several SNPs in the toll-like receptor 4 (TLR4) and syntaxin binding protein 5-like (STXBP5L) loci that were associated with fibrosis risk independently of the original significant SNPs. Haplotypes consisting of these SNPs in TLR4 and STXBP5L were strongly associated with fibrosis risk (global P=3.04 x 10(-5) and 4.49 x 10(-6), respectively).

conclusionsMultiple variants in TLR4 and STXBP5L genes modulate risk of liver fibrosis. These findings are of relevance for understanding the pathogenesis of HCV-induced liver disease in Caucasians and may be extended to other ethnicities as well.

Indexed as

Polymorphism, Single NucleotideAdaptor Proteins, Vesicular TransportCarrier ProteinsCase-Control StudiesGenome-Wide Association StudyHaplotypesHepatitis C, ChronicHumansLinkage DisequilibriumLiver CirrhosisRisk FactorsToll-Like Receptor 4White PeopleAdaptor Proteins, Vesicular TransportCarrier ProteinsSTXBP5L protein, humanTLR4 protein, humanToll-Like Receptor 4

Identifiers

PMID19586676
PMCPMC2883297
OpenAlexW2168971280

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.