Evidence map›Paper›PMID 19584914›Full record

ArticlePloS one2009

LPS-induced genes in intestinal tissue of the sea cucumber Holothuria glaberrima.

Francisco Ramírez-Gómez, Pablo A Ortiz-Pineda, Gabriela Rivera-Cardona, José E García-Arrarás

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Draft Genome of the Sea CucumberFrontiers in Marine Science · 2021
    Article
  3. A roadmap for intestinal regeneration.The International journal of developmental biology · 2021
    Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Francisco Ramírez-GómezDepartment of Biology, University of Puerto Rico, Río Piedras, San Juan, Puerto Rico.
Pablo A Ortiz-Pineda
Gabriela Rivera-Cardona
José E García-Arrarás
University of Puerto Rico at Río Piedras · PR

Funding

VIRUS E34 TAILSPIKE: MODULE FOR PROTEIN:LPS INTERACTIONP20RR016470 · NCRR · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI MEJIAS, IDA A · 2001 to 2011
$31.2M
X-RAY STUDY OF SYNTHETIC OXYGEN CARRIERS RELATED TO BIOLOGICAL SYSTEMSS06GM008102 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI ARCE, RAFAEL · 1989 to 2008
$23.8M
Molecular control of intestinal regenerationSC1GM084770 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2008 to 2011
$1.5M
NCRR NIH HHS P20 RR016470NCRR NIH HHS P20RR16470NIGMS NIH HHS 1SC1GM084770-01NIGMS NIH HHS S06 GM008102NIGMS NIH HHS S06GM08102NIGMS NIH HHS SC1 GM084770
6 · The paper itself

Abstract

Metazoan immunity is mainly associated with specialized cells that are directly involved with the immune response. Nevertheless, both in vertebrates and invertebrates other organs might respond to immune activation and participate either directly or indirectly in the ongoing immune process. However, most of what is known about invertebrate immunity has been restricted to immune effector cells and little information is available on the immune responses of other tissues or organs. We now focus on the immune reactions of the intestinal tissue of an echinoderm. Our study employs a non-conventional model, the echinoderm Holothuria glaberrima, to identify intestinal molecules expressed after an immune challenge presented by an intra-coelomic injection of lipopolysaccharides (LPS). The expression profiles of intestinal genes expressed differentially between LPS-injected animals and control sea water-injected animals were determined using a custom-made Agilent microarray with 7209 sea cucumber intestinal ESTs. Fifty (50) unique sequences were found to be differentially expressed in the intestine of LPS-treated sea cucumbers. Seven (7) of these sequences represented homologues of known proteins, while the remaining (43) had no significant similarity with any protein, EST or RNA database. The known sequences corresponded to cytoskeletal proteins (Actin and alpha-actinin), metabolic enzymes (GAPDH, Ahcy and Gnmt), metal ion transport/metabolism (major yolk protein) and defense/recognition (fibrinogen-like protein). The expression pattern of 11 genes was validated using semi-quantitative RT-PCR. Nine of these corroborated the microarray results and the remaining two showed a similar trend but without statistical significance. Our results show some of the molecular events by which the holothurian intestine responds to an immune challenge and provide important information to the study of the evolution of the immune response.

Indexed as

Amino Acid SequenceAnimalsExpressed Sequence TagsGene Expression RegulationHolothuriaIntestinal MucosaIntestinesLipopolysaccharidesMolecular Sequence DataOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidLipopolysaccharides

Identifiers

PMID19584914
PMCPMC2702171
OpenAlexW1998833726

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.