Evidence map›Paper›PMID 19584170›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2009

Down-regulation of epidermal growth factor receptor by selective expansion of a 5'-end regulatory dinucleotide repeat in colon cancer with microsatellite instability.

Svetlana Baranovskaya, Yolanda Martin, Sergio Alonso, Ksenia L Pisarchuk, Mario Falchetti, Yuichi Dai, Sophia Khaldoyanidi, Stan Krajewski, Inna Novikova, Yuri S Sidorenko and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Svetlana BaranovskayaBurnham Institute for Medical Research, La Jolla, California 92037, USA.
Yolanda Martin
Sergio Alonso
Ksenia L Pisarchuk
Mario Falchetti
Yuichi Dai
Sophia Khaldoyanidi
Stan Krajewski
Inna Novikova
Yuri S Sidorenko
Manuel Perucho
Sergei R Malkhosyan
California Institute for Biomedical Research · USInstitute for Medical Research · USSanford Burnham Prebys Medical Discovery Institute · USRostov Research Institute of Oncology · RUTorrey Pines Institute For Molecular Studies · US

Funding

MOLECULAR PATHOGENESIS OF CANCER OF MUTATOR PHENOTYPER37CA063585 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI PERUCHO, MANUEL · 1999 to 2008
$7.0M
Microsatellite instability and cancer gene expressionR01CA098818 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI PERUCHO, MANUEL · 2003 to 2007
$2.1M
NCI NIH HHS R01 CA098818NCI NIH HHS R01CA098818NCI NIH HHS R37 CA063585NCI NIH HHS R37 CA63585
6 · The paper itself

Abstract

purposeThe epidermal growth factor receptor (EGFR) is overexpressed in several tumor types, and its expression is influenced by the length of a 5'-end microsatellite repeat (CA)n: the longer the repeat, the lower the expression. Dinucleotide repeats accumulate insertion/deletion types of mutations in tumors with microsatellite instability. We designed this study to estimate the occurrence of these mutations in EGFR(CA)n and their relevance in carcinogenesis of microsatellite instability-positive colon and gastric tumors. EXPERIMENTAL

designWe analyzed the frequency of EGFR(CA)n mutations in vivo in 55 colorectal and 14 gastric microsatellite instability-positive cancers, and in vitro in single-cell clone cultures of microsatellite instability-positive colon tumor cell line LS174. Single-cell clone cultures with different repeat lengths were analyzed by fluorescent-activated cell sorter for EGFR cell-surface expression. A correlation analysis was done between EGFR(CA)n mutations and mutations in KRAS, BRAF, and p53.

resultsUnlike single-cell clone cultures, which exhibited higher rate of deletions compared with insertions, most of EGFR(CA)n mutations in colon and gastric tumors were insertions. Longer EGFR(CA)n correlated with lower EGFR cell-surface expression in single-cell clone cultures. In colon cancers, the elongation of the repeat was associated negatively with mutations in KRAS and BRAF, but not in p53.

conclusionsThe EGFR(CA)n elongation observed in tumors cannot be explained by an intrinsic property of this repeat favoring insertions versus deletions. Instead, a selection for repeat elongation occurs in microsatellite instability-positive tumors, leading to EGFR down-regulation. These findings suggest that in microsatellite instability-positive tumors current therapies targeting EGFR overexpression may have either no effect or an opposite to the expected effect.

Indexed as

Microsatellite Instability5' Untranslated RegionsBase SequenceCell Line, TumorColonic NeoplasmsDinucleotide RepeatsDNA Mutational AnalysisDown-RegulationErbB ReceptorsFlow CytometryGene FrequencyGenes, rasGenotypeHumansMutagenesis, InsertionalMutation5' Untranslated RegionsBRAF protein, humanErbB ReceptorsPoly AProto-Oncogene Proteins B-rafTumor Suppressor Protein p53

Identifiers

PMID19584170
PMCPMC2885604
OpenAlexW2136089061

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.