Evidence map›Paper›PMID 19584139›Full record

ArticleCarcinogenesis2009

Association between global DNA hypomethylation in leukocytes and risk of breast cancer.

Ji-Yeob Choi, Smitha R James, Petra A Link, Susan E McCann, Chi-Chen Hong, Warren Davis, Mary K Nesline, Christine B Ambrosone, Adam R Karpf

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 4 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 4 syntheses or guidelines pooled it, 185 citations in OpenAlex.

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  16. Advanced biomedical research · 2023
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Ji-Yeob ChoiDepartment of Cancer Prevention and Control, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14263, USA.
Smitha R James
Petra A Link
Susan E McCann
Chi-Chen Hong
Warren Davis
Mary K Nesline
Christine B Ambrosone
Adam R Karpf
Roswell Park Comprehensive Cancer Center · US

Funding

Epigenetic regulation of cancer/germ-line antigen gene expressionR01CA116674 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI KARPF, ADAM R. · 2006 to 2010
$1.4M
NCI NIH HHS R01 CA116674NCI NIH HHS R01CA11674
6 · The paper itself

Abstract

backgroundGlobal DNA hypomethylation may result in chromosomal instability and oncogene activation, and as a surrogate of systemic methylation activity, may be associated with breast cancer risk.

methodsSamples and data were obtained from women with incident early-stage breast cancer (I-IIIa) and women who were cancer free, frequency matched on age and race. In preliminary analyses, genomic methylation of leukocyte DNA was determined by measuring 5-methyldeoxycytosine (5-mdC), as well as methylation analysis of the LINE-1-repetitive DNA element. Further analyses used only 5-mdC levels. Logistic regression models were used to estimate odds ratios (ORs) and 95% confidence intervals (CIs) for risk of breast cancer in relation to amounts of methylation.

resultsIn a subset of samples tested (n = 37), 5-mdC level was not correlated with LINE-1 methylation. 5-mdC level in leukocyte DNA was significantly lower in breast cancer cases than healthy controls (P = 0.001), but no significant case-control differences were observed with LINE-1 methylation (P = 0.176). In the entire data set, we noted significant differences in 5-mdC levels in leukocytes between cases (n = 176) and controls (n = 173); P value < 0.001. Compared with women in the highest 5-mdC tertile (T3), women in the second (T2; OR = 1.49, 95% CI = 0.84-2.65) and lowest tertile (T1; OR = 2.86, 95% CI = 1.65-4.94) had higher risk of breast cancer (P for trend < or = 0.001). Among controls only and cases and controls combined, only alcohol intake was found to be inversely associated with methylation levels.

conclusionThese findings suggest that leukocyte DNA hypomethylation is independently associated with development of breast cancer.

Indexed as

DNA Methylation5-MethylcytosineAdultAgedAlcohol DrinkingBreast NeoplasmsConfidence IntervalsDietary SupplementsDNA, NeoplasmFemaleHumansLeukocytesMiddle AgedNeoplasm StagingOdds RatioRepetitive Sequences, Nucleic Acid5-Methylcytosine5-methyldeoxycytosineDNA, Neoplasm

Identifiers

PMID19584139
PMCPMC2783000
OpenAlexW2097156376

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.