Evidence map›Paper›PMID 19583219›Full record

ArticleBiochemistry2009

Identification of Escherichia coli HemG as a novel, menadione-dependent flavodoxin with protoporphyrinogen oxidase activity.

Tye O Boynton, Lauren E Daugherty, Tamara A Dailey, Harry A Dailey

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
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  8. Article
  9. Biosynthesis of the modified tetrapyrroles-the pigments of life.The Journal of biological chemistry · 2020
    Review
  10. Making and breaking heme.Current opinion in structural biology · 2019
    Review
  11. Article
  12. The cyanobacterial protoporphyrinogen oxidase HemJ is a newThe Journal of biological chemistry · 2018
    Article
  13. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  14. The Complex Transcriptional Response ofG3 (Bethesda, Md.) · 2017
    Article
  15. Heme Synthesis and Acquisition in Bacterial Pathogens.Journal of molecular biology · 2016
    Review
  16. Article
  17. Review
  18. Review
  19. Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tye O BoyntonBiomedical and Health Sciences Institute and Department of Microbiology, University of Georgia, Athens, Georgia 30602, USA.
Lauren E Daugherty
Tamara A Dailey
Harry A Dailey
University of Georgia · US

Funding

TERMINAL HEME SYNTHETIC ENZYMESR01DK032303 · NIDDK · UNIVERSITY OF GEORGIA (UGA) · PI DAILEY, HARRY A · 1986 to 2010
$2.4M
Terminal steps in Heme BiosynthesisR56DK032303 · NIDDK · UNIVERSITY OF GEORGIA · PI DAILEY, HARRY A · 2010 to 2010
$175k
NIDDK NIH HHS DK32303NIDDK NIH HHS R01 DK032303NIDDK NIH HHS R56 DK032303
6 · The paper itself

Abstract

Protoporphyrinogen oxidase (PPO, EC 1.3.3.4) catalyzes the six-electron oxidation of protoporphyrinogen IX to the fully conjugated protoporphyrin IX. Eukaryotes and Gram-positive bacteria possess an oxygen-dependent, FAD-containing enzyme for this step, while the majority of Gram-negative bacteria lack this oxygen-dependent PPO. In Escherichia coli, PPO activity is known to be linked to respiration and the quinone pool. In E. coli SASX38, the knockout of hemG causes a loss of measurable PPO activity. HemG is a small soluble protein typical of long chain flavodoxins. Herein, purified recombinant HemG was shown to be capable of a menadione-dependent conversion of protoporphyrinogen IX to protoporphyrin IX. Electrochemical analysis of HemG revealed similarities to other flavodoxins. Interestingly, HemG, a member of a class of the long chain flavodoxin family that is unique to the gamma-proteobacteria, possesses a 22-residue sequence that, when transferred into E. coli flavodoxin A, produces a chimera that will complement an E. coli hemG mutant, indicating that this region confers PPO activity to the flavodoxin. These findings reveal a previously unidentified class of PPO enzymes that do not utilize oxygen as an electron acceptor, thereby allowing gamma-proteobacteria to synthesize heme in both aerobic and anaerobic environments.

Indexed as

Genes, BacterialAmino Acid SequenceCatalysisElectron Spin Resonance SpectroscopyEscherichia coliEscherichia coli ProteinsMolecular Sequence DataPlasmidsProtoporphyrinogen OxidaseRecombinant ProteinsSequence Homology, Amino AcidVitamin K 3Escherichia coli ProteinsHemG protein, E coliProtoporphyrinogen OxidaseRecombinant ProteinsVitamin K 3

Identifiers

PMID19583219
PMCPMC2749469
OpenAlexW2056588828

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.