Evidence map›Paper›PMID 19582487›Full record

ArticleNeurogenetics2010

Disruption of CNTNAP2 and additional structural genome changes in a boy with speech delay and autism spectrum disorder.

Martin Poot, Vera Beyer, Ira Schwaab, Natalja Damatova, Ruben Van't Slot, Jo Prothero, Sue E Holder, Thomas Haaf

Abstract readCase Reports
PubMed Publisher
In one paragraph

Article in Neurogenetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 135 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Behavioral Physiology of the CNTNAP2 Knockout Mouse.HSOA trends in anatomy and physiology · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Association between Genetic Variants inBehavioural neurology · 2021
    Article
  9. Article
  10. Review
  11. Synaptic recognition molecules in development and disease.Current topics in developmental biology · 2021
    Article
  12. How Many Genes Does It Take?Molecular syndromology · 2020
    Article
  13. Article
  14. Mutations in Mediator Complex GenesMolecular syndromology · 2020
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Martin PootDepartment of Medical Genetics, University Medical Centre Utrecht, Mail stop: KC.04.084.2, P. O. Box 85090, 3508, Utrecht, The Netherlands. M.Poot@umcutrecht.nl
Vera Beyer
Ira Schwaab
Natalja Damatova
Ruben Van't Slot
Jo Prothero
Sue E Holder
Thomas Haaf
Johannes Gutenberg University Mainz · DELondon North West Healthcare NHS Trust · GBUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Patients with autism spectrum disorder (ASD) frequently harbour chromosome rearrangements and segmental aneuploidies, which allow us to identify candidate genes. In a boy with mild facial dysmorphisms, speech delay and ASD, we reconstructed by karyotyping, FISH and SNP array-based segmental aneuploidy profiling a highly complex chromosomal rearrangement involving at least three breaks in chromosome 1 and seven breaks in chromosome 7. Chromosome banding revealed an inversion of region 7q32.1-7q35 on the derivative chromosome 7. FISH with region-specific BACs mapped both inversion breakpoints and revealed additional breaks and structural changes in the CNTNAP2 gene. Two gene segments were transposed and inserted into the 1q31.2 region, while the CNTNAP2 segment between the two transposed parts as well as intron 13 to the 5-UTR were retained on the der(7). SNP array analysis revealed an additional de novo deletion encompassing the distal part of intron1 and exon 2 of CNTNAP2, which contains FOXP2 binding sites. Second, we found another de novo deletion on chromosome 1q41, containing 15 annotated genes, including KCTD3 and USH2A. Disruptions of the CNTNAP2 gene have been associated with ASD and with Gilles de la Tourette syndrome (GTS). Comparison of disruptions of CNTNAP2 in patients with GTS and ASD suggests that large proximal disruptions result in either GTS or ASD, while relatively small distal disruptions may be phenotypically neutral. For full-blown ASD to develop, a proximal disruption of CNTNAP2 may have to occur concomitantly with additional genome mutations such as hemizygous deletions of the KCTD3 and USH2A genes.

Indexed as

5' Untranslated RegionsAneuploidyBinding SitesChild Development Disorders, PervasiveChild, PreschoolHumansIn Situ Hybridization, FluorescenceIntronsKaryotypingLanguage Development DisordersMaleMembrane ProteinsMutationNerve Tissue ProteinsPolymorphism, Single NucleotideTranslocation, Genetic5' Untranslated RegionsCNTNAP2 protein, humanMembrane ProteinsNerve Tissue Proteins

Identifiers

PMID19582487
OpenAlexW2075825728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.