Evidence map›Paper›PMID 19581910›Full record

ReviewNature reviews. Clinical oncology2009

Systems pathology--taking molecular pathology into a new dimension.

Dana Faratian, Robert G Clyde, John W Crawford, David J Harrison

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Clinical oncology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
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  5. Article
  6. Review
  7. Review
  8. Article
  9. Model-based global sensitivity analysis as applied to identification of anti-cancer drug targets and biomarkers of drug resistance in the ErbB2/3 network.European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences · 2012
    Article
  10. Article
  11. Systems pathology: a critical review.Molecular oncology · 2012
    Review
  12. Review
  13. Systems pathology.Breast cancer research : BCR · 2010
    Article
  14. Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dana FaratianDivision of Pathology and Breakthrough Research Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK. d.faratian@ed.ac.uk
Robert G Clyde
John W Crawford
David J Harrison

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The wealth of morphological, histological, and molecular data from human cancers available to pathologists means that pathology is poised to become a truly quantitative systems science. By measuring morphological parameters such as tumor stage and grade, and by measuring molecular biomarkers such as hormone receptor status, pathologists have sometimes accurately predicted what will happen to a patient's tumor. While 'omic' technologies have seemingly improved prognostication and prediction, some molecular 'signatures' are not useful in clinical practice because of the failure to independently validate these approaches. Many associations between gene 'signatures' and clinical response are correlative rather than mechanistic, and such associations are poor predictors of how cellular biochemical networks will behave in perturbed, diseased cells. Using systems biology, the dynamics of reactions in cells and the behavior between cells can be integrated into models of cancer. The challenge is how to integrate multiple data from the clinic into tractable models using mathematical models and systems biology, and how to make the resultant model sufficiently robust to be of practical use. We discuss the difficulties in using mathematics to model cancer, and review some approaches that may be used to allow systems biology to be successfully applied in the clinic.

Indexed as

Models, BiologicalAntineoplastic AgentsBiomarkers, TumorBreast NeoplasmsCell CompartmentationComputational BiologyFemaleGene Regulatory NetworksGenes, NeoplasmHumansImage Processing, Computer-AssistedMetabolic Networks and PathwaysMolecular Diagnostic TechniquesNeoplasm StagingOrgan SpecificityPathology, ClinicalAntineoplastic AgentsBiomarkers, Tumor

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.