Evidence map›Paper›PMID 19581588›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Insights into the molecular architecture of the 26S proteasome.

Stephan Nickell, Florian Beck, Sjors H W Scheres, Andreas Korinek, Friedrich Förster, Keren Lasker, Oana Mihalache, Na Sun, István Nagy, Andrej Sali and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Imaging and characterizing cells using tomography.Archives of biochemistry and biophysics · 2015
    Review
  17. Structural characterization of the interaction of Ubp6 with the 26S proteasome.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Review
  19. An absolute interval scale of order for point patterns.Journal of the Royal Society, Interface · 2014
    Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Stephan NickellMax Planck Institute of Biochemistry, D-82152 Martinsried, Germany.
Florian Beck
Sjors H W Scheres
Andreas Korinek
Friedrich Förster
Keren Lasker
Oana Mihalache
Na Sun
István Nagy
Andrej Sali
Jürgen M Plitzko
Jose-Maria Carazo
Matthias Mann
Wolfgang Baumeister

Funding

NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
IMAGE PROCESSING IN BIOLOGICAL 3D ELECTRON MICROSCOPYR01HL070472 · NHLBI · CUNY GRADUATE SCH AND UNIV CTR · PI HERMAN, GABOR T · 2001 to 2008
$2.6M
Protein Modeling by Satisfaction of Spatial RestraintsR01GM054762 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2001 to 2008
$2.1M
NCRR NIH HHS U54 RR022220NHLBI NIH HHS HL070472NHLBI NIH HHS R01 HL070472NIGMS NIH HHS R01 GM054762NIGMS NIH HHS R01 GM083960NIGMS NIH HHS R01 GM54762
6 · The paper itself

Abstract

Cryo-electron microscopy in conjunction with advanced image analysis was used to analyze the structure of the 26S proteasome and to elucidate its variable features. We have been able to outline the boundaries of the ATPase module in the "base" part of the regulatory complex that can vary in its position and orientation relative to the 20S core particle. This variation is consistent with the "wobbling" model that was previously proposed to explain the role of the regulatory complex in opening the gate in the alpha-rings of the core particle. In addition, a variable mass near the mouth of the ATPase ring has been identified as Rpn10, a multiubiquitin receptor, by correlating the electron microscopy data with quantitative mass spectrometry.

Indexed as

Adenosine TriphosphatasesAnimalsCryoelectron MicroscopyDrosophila melanogasterMass SpectrometryModels, MolecularProteasome Endopeptidase ComplexProtein SubunitsProtein TransportAdenosine TriphosphatasesATP dependent 26S proteaseProteasome Endopeptidase ComplexProtein Subunits

Identifiers

PMID19581588
PMCPMC2715492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.