Evidence map›Paper›PMID 19581299›Full record

ArticleThe Journal of biological chemistry2009

In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response.

Marcela Avila-Pérez, Jocelyne Vreede, Yifen Tang, Onno Bende, Aba Losi, Wolfgang Gärtner, Klaas Hellingwerf

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Review
  2. Light Control in Microbial Systems.International journal of molecular sciences · 2024
    Review
  3. The circadian clock of the bacteriumScience advances · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marcela Avila-PérezSwammerdam Institute for Life Science, University of Amsterdam, 1018 WV Amsterdam, The Netherlands.
Jocelyne Vreede
Yifen Tang
Onno Bende
Aba Losi
Wolfgang Gärtner
Klaas Hellingwerf

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The general stress response of Bacillus subtilis can be activated by stimuli such as the addition of salt or ethanol and with blue light. In the latter response, YtvA activates sigma(B) through a cascade of Rsb proteins, organized in stressosomes. YtvA is composed of an N-terminal LOV (light, oxygen, and voltage) domain and a C-terminal STAS (sulfate transporter and anti-sigma factor) domain and shows light-modulated GTP binding in vitro. Here, we examine the mechanism of YtvA-mediated activation of sigma(B) in vivo with site-directed mutagenesis. Constitutive off and constitutive on mutations have been identified. Disruption of GTP binding in the STAS domain eliminates light activation of sigma(B). In contrast, modification of sites relevant for phosphorylation of STAS domains does not affect the stress response significantly. The data obtained are integrated into a model for the structure of full-length YtvA, which presumably functions as a dimer.

Indexed as

Bacillus subtilisBinding SitesDimerizationDNA Mutational AnalysisEscherichia coliGTP-Binding ProteinsGuanosine TriphosphateLightModels, BiologicalMutagenesis, Site-DirectedMutationOxygenPhosphorylationProtein BindingProtein Structure, TertiaryStress, PhysiologicalGTP-Binding ProteinsGuanosine TriphosphateOxygen

Identifiers

PMID19581299
PMCPMC2757199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.