Evidence map›Paper›PMID 19580775›Full record

ArticleBiophysical journal2009

Molecular accessibility in relation to cell surface topography and compression against a flat substrate.

Sandrine A Hocdé, Ollivier Hyrien, Richard E Waugh

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sandrine A HocdéDepartment of Biomedical Engineering, University of Rochester, Rochester, New York, USA.
Ollivier Hyrien
Richard E Waugh
University of Rochester · US

Funding

VASCULAR RELATIONS OF BLOOD CELLS AND PROTEINSP01HL018208 · NHLBI · UNIVERSITY OF ROCHESTER · PI WAUGH, RICHARD E · 1985 to 2014
$24.7M
Statistical Inference on Chemotherapy Effects from Flow Cytometry DataR01CA134839 · NCI · UNIVERSITY OF ROCHESTER · PI HYRIEN, OLLIVIER · 2008 to 2012
$1.2M
NCI NIH HHS R01 CA134839NCI NIH HHS R01-CA134839NHLBI NIH HHS P01 HL018208NHLBI NIH HHS P01-HL18208
6 · The paper itself

Abstract

The recruitment of cells to the vascular wall in vivo or the capture of cell subpopulations at the surface of a fabricated device requires the formation of bonds between specific molecular pairs on the cell and the substrate. The ability of a molecule to form a bond depends critically on its localization relative to the cell surface topography. In this report, we present a framework for the quantitative assessment of molecular availability that accounts for the deformability of the cell surface and the balance of forces in the interface, as well as the variability of surface protrusion lengths and the preference for molecules to reside at or away from the tips of surface projections. We also examined how molecular availability should change with increasing compression of the cell against the substrate. Finally, we convolved the distribution of molecules at the interface with a decaying evanescent excitation to predict the fluorescence intensity in total internal reflectance fluorescence microscopy, which can provide a quantitative measure of the relative availability of different molecules at a cell-substrate interface. Model predictions show good agreement with measurements of fluorescence intensity of different molecules labeled fluorescently on the surface of a human neutrophil compressed against a glass surface.

Indexed as

Models, BiologicalPressureAlgorithmsCell MembraneCells, CulturedCell ShapeHumansMembrane ProteinsMicroscopy, Electron, TransmissionMicroscopy, FluorescenceMicrovilliNeutrophilsProbabilityMembrane Proteins

Identifiers

PMID19580775
PMCPMC2711385
OpenAlexW2070606386

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.