Evidence map›Paper›PMID 19580763›Full record

ArticleBiophysical journal2009

Ligand extraction properties of the GM2 activator protein and its interactions with lipid vesicles.

Yong Ran, Gail E Fanucci

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  7. Ganglioside biochemistry.ISRN biochemistry · 2012
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yong RanDepartment of Chemistry, University of Florida, Gainesville, Florida 32611-7200, USA.
Gail E Fanucci
University of Florida · US

Funding

Membrane Binding Properties of the GM2 Activator ProteinR01GM077232 · NIGMS · UNIVERSITY OF FLORIDA · PI FANUCCI, GAIL E · 2006 to 2010
$1.2M
NIGMS NIH HHS R01 GM077232NIGMS NIH HHS R01GM077232
6 · The paper itself

Abstract

The GM2 activator protein (GM2AP) is an accessory protein required for the enzymatic conversion of GM2 to GM3 by hydrolases in the lysosomal compartments of cells. Here, GM2AP interactions with lipid vesicles are investigated by sucrose-loaded vesicle sedimentation and gel filtration assays, and the effects of pH and lipid composition on membrane binding and lipid extraction are characterized. The sedimentation experiments allow for facile quantification of the percentage of protein in solution and on the bilayer surface, with detailed analysis of the protein:lipid complex that remains in solution. Optimum binding and ligand extraction is found for pH 4.8 where <15% of the protein remains surface associated regardless of the lipid composition. In addition to extracting GM2, we find that GM2AP readily extracts dansyl-headgroup-labeled lipids as well as other phospholipids from vesicles. The ability of GM2AP to extract dansyl-DHPE from vesicles is altered by pH and the specific ligand GM2. Although the unique endosomal lipid, bis(monoacylglycero)phosphate, is not required for ligand extraction, it does enhance the extraction efficiency of GM2 when cholesterol is present in the vesicles.

Indexed as

CholesterolChromatography, GelDansyl CompoundsGangliosidesG(M2) Activator ProteinHydrogen-Ion ConcentrationLipid BilayersLiposomesLysophospholipidsModels, ChemicalModels, MolecularMonoglyceridesPhosphatidylcholinesPhosphatidylethanolaminesPhosphatidylglycerolsPhospholipids1,2-dipalmitoyl-3-phosphatidylethanolamine1-palmitoyl-2-oleoylglycero-3-phosphoglycerol1-palmitoyl-2-oleoylphosphatidylcholinebis(monoacylglyceryl)phosphateCholesterolDansyl CompoundsGangliosidesG(M2) Activator ProteinLipid BilayersLiposomesLysophospholipidsMonoglyceridesPhosphatidylcholinesPhosphatidylethanolaminesPhosphatidylglycerolsPhospholipidssialogangliosidesSucroseUnilamellar Liposomes

Identifiers

PMID19580763
PMCPMC2711380
OpenAlexW1989272105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.