ReviewTrends in microbiology2009
Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.
Review in Trends in microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
21 citing papers in PubMed.
- The Saccharomyces Genome Database-a history of ideas and accomplishments, 1994-2026.FEMS yeast research · 2026Article
- Modulators of a robust and efficient metabolism: Perspective and insights from the Rid superfamily of proteins.Advances in microbial physiology · 2023Review
- Extracting novel hypotheses and findings from RNA-seq data.FEMS yeast research · 2020Review
- Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response.Journal of molecular biology · 2019Review
- Single-Gene Deletions Contributing to Loss of Heterozygosity inG3 (Bethesda, Md.) · 2019Article
- Article
- Omics Data Complementarity Underlines Functional Cross-Communication in Yeast.Journal of integrative bioinformatics · 2017Article
- Article
- Article
- Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates.mBio · 2014Article
- Genetic resources for advanced biofuel production described with the Gene Ontology.Frontiers in microbiology · 2014Review
- Evolutionary mobility of the ribosomal DNA array in yeasts.Genome biology and evolution · 2013Article
- A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.BMC bioinformatics · 2012Article
- Incidence of genome structure, DNA asymmetry, and cell physiology on T-DNA integration in chromosomes of the phytopathogenic fungus Leptosphaeria maculans.G3 (Bethesda, Md.) · 2012Article
- De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology.Microbial cell factories · 2012Article
- Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.Database : the journal of biological databases and curation · 2012Article
- CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.Database : the journal of biological databases and curation · 2012Article
- Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.Database : the journal of biological databases and curation · 2011Article
- From complete genome sequence to 'complete' understanding?Trends in biotechnology · 2010Article
- Systems biology from a yeast omics perspective.FEBS letters · 2009Review
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
The quest to characterize each of the genes of the yeast Saccharomyces cerevisiae has propelled the development and application of novel high-throughput (HTP) experimental techniques. To handle the enormous amount of information generated by these techniques, new bioinformatics tools and resources are needed. Gene Ontology (GO) annotations curated by the Saccharomyces Genome Database (SGD) have facilitated the development of algorithms that analyze HTP data and help predict functions for poorly characterized genes in S. cerevisiae and other organisms. Here, we describe how published results are incorporated into GO annotations at SGD and why researchers can benefit from using these resources wisely to analyze their HTP data and predict gene functions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.