Evidence map›Paper›PMID 19576794›Full record

ArticleImmunity2009

Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus.

Martin Schlee, Andreas Roth, Veit Hornung, Cristina Amparo Hagmann, Vera Wimmenauer, Winfried Barchet, Christoph Coch, Markus Janke, Aleksandra Mihailovic, Greg Wardle and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 448 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
448citing papers in PubMed, 1 pooled it
21.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

448 citing papers in PubMed, 1 synthesis or guideline pooled it, 773 citations in OpenAlex.

  1. Pooled it
  2. Review
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  13. Designing nucleic acid-based therapeutics for cancer treatment: Updates on the state of the art.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Review
  14. Intrinsic OASL expression governs heterogeneity in interferon induction during influenza A virus infection.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Review
  16. Review
  17. Review
  18. Innate Immune and Inflammatory Responses to Dengue Virus Infection.Current topics in microbiology and immunology · 2026
    Review
  19. Review
  20. Review

388 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Martin SchleeInstitute of Clinical Chemistry and Pharmacology, University Hospital, University of Bonn, D-53127 Bonn, Germany.
Andreas Roth
Veit Hornung
Cristina Amparo Hagmann
Vera Wimmenauer
Winfried Barchet
Christoph Coch
Markus Janke
Aleksandra Mihailovic
Greg Wardle
Stefan Juranek
Hiroki Kato
Taro Kawai
Hendrik Poeck
Katherine A Fitzgerald
Osamu Takeuchi
Shizuo Akira
Thomas Tuschl
Eicke Latz
Janos Ludwig
Gunther Hartmann
University of Bonn · DEHoward Hughes Medical Institute · USThe University of Osaka · JPUniversity of Massachusetts Chan Medical School · US

Funding

Gene Regulation in Innate ImmunityR37AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2015 to 2024
$4.6M
Regulation of Type I Interferon Gene Expression in the Innate Immune ResponseR01AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2006 to 2010
$2.0M
Mechanisms of TLR 9 ActivationR01AI065483 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GOLENBOCK, DOUGLAS T · 2005 to 2009
$1.7M
Regulation of Type I Interferon Gene Expression in the Innate Immune ResponseR56AI067497 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FITZGERALD, KATHERINE A. · 2012 to 2012
$415k
NIAID NIH HHS AI-065483NIAID NIH HHS AI-067497NIAID NIH HHS R01 AI065483NIAID NIH HHS R01 AI067497NIAID NIH HHS R37 AI067497NIAID NIH HHS R56 AI067497
6 · The paper itself

Abstract

Antiviral immunity is triggered by immunorecognition of viral nucleic acids. The cytosolic helicase RIG-I is a key sensor of viral infections and is activated by RNA containing a triphosphate at the 5' end. The exact structure of RNA activating RIG-I remains controversial. Here, we established a chemical approach for 5' triphosphate oligoribonucleotide synthesis and found that synthetic single-stranded 5' triphosphate oligoribonucleotides were unable to bind and activate RIG-I. Conversely, the addition of the synthetic complementary strand resulted in optimal binding and activation of RIG-I. Short double-strand conformation with base pairing of the nucleoside carrying the 5' triphosphate was required. RIG-I activation was impaired by a 3' overhang at the 5' triphosphate end. These results define the structure of RNA for full RIG-I activation and explain how RIG-I detects negative-strand RNA viruses that lack long double-stranded RNA but do contain blunt short double-stranded 5' triphosphate RNA in the panhandle region of their single-stranded genome.

Indexed as

AnimalsCells, CulturedDEAD Box Protein 58DEAD-box RNA HelicasesHumansInterferon-alphaMiceMice, Mutant StrainsMonocytesOligoribonucleotidesPolyphosphatesReceptors, ImmunologicRNA, Double-StrandedRNA, ViralRNA VirusesDdx58 protein, mouseDEAD Box Protein 58DEAD-box RNA HelicasesInterferon-alphaOligoribonucleotidesPolyphosphatesReceptors, ImmunologicRIGI protein, humanRNA, Double-StrandedRNA, Viraltriphosphoric acid

Identifiers

PMID19576794
PMCPMC2824854
OpenAlexW2032948492

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.